Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_007730.2 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq519 125 1e-25 seq3069 93.3 7e-16 seq1694 82.4 1e-12 >seq519 Length=3254320 Score = 125 bits (138), Expect = 1e-25 Identities = 337/496 (68%), Gaps = 27/496 (5%) Strand=Plus/Plus Query 2091 AAATTACTATTTAAATTATGAAACTGTAATACAAAA-TCTTTGGGAGCTTTCTCCCTTAG 2149 |||||| ||| ||||||||| | |||| | ||| |||||||| ||||||| ||| Sbjct 1748825 AAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCTTTGGGT-CTTTCTCTTTTAT 1748883 Query 2150 TATATTGAGGGCCGCAGCT-TTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGG 2208 ||| | | || ||| || |||| | | |||| || || || || ||| | || || Sbjct 1748884 TATTTGTAATGCTGCATCTCTTGGTGCAT-AATTAATCGCTTCAGCGTATACATC--TGC 1748940 Query 2209 CAG-ATTGGCA-ACCTCCTCTAGCTGATCTTCCATCGATTTGGAAAAC-TCCAAAGTCAA 2265 | ||| | || ||| ||| | ||||||||||| ||||| ||| | ||| || || | Sbjct 1748941 AACTATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAA-TCTA 1748999 Query 2266 GGATGTCTCCGTCTTCTTCCATGTAGGATTTGAC--ATC---GCTTGAGCTTTTAGCTCC 2320 |||||| || | ||| ||||| ||||| || ||| | |||| |||||| Sbjct 1749000 CATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGA---TTTAGCATA 1749056 Query 2321 CTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGTTTGTAGGTCGAAGAATCTGTT 2380 |||| || |||||||| || | || || ||||||||| |||||| || | | Sbjct 1749057 TTGAACATTTGGATGGAATTGAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTG 1749115 Query 2381 ATTTTGGCATTTGAATTTGCCTTCGAACTGGATGAGGACATGCAGGTGAGGAGTCCCATC 2440 ||| ||| |||||| ||| ||||| || || ||||||| || || |||| | Sbjct 1749116 ATTGGTGCAGCAGAATTTCCCTGTGAACTAGA-GATTACATGCAAATGTGGT-TCCCGTT 1749173 Query 2441 TTCGTGTAGTTCTCTGCAAACTCTGATGAACAGTTT---ATTTGTAGGTGTTTCTAGGTT 2497 ||||||||||||||| ||| | ||||| ||| ||||||||| | ||||| Sbjct 1749174 GCTGTGTAGTTCTCTGCACACTTTTATGAA---TTTAAGATTTGTAGGGTAGTTGAGGTT 1749230 Query 2498 TTTAATTTGGGAAAGGGTTTCTTCTTTTGTGAGTGAGCAGTGAGGGTATGTGAGGAAATA 2557 ||| | || ||| || |||||||||||| | || ||| | ||||| ||||| Sbjct 1749231 TTTGAGATGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATA 1749290 Query 2558 GTTCTTGGCATTTATT 2573 || ||| ||||||| Sbjct 1749291 ATTTTTGCTATTTATT 1749306 Score = 114 bits (126), Expect = 2e-22 Identities = 327/499 (66%), Gaps = 8/499 (2%) Strand=Plus/Plus Query 2079 AAAATCCTATCTAAATTACTATTTAAATTATGAAACTGTA-ATACAAAATCTTTGGGAGC 2137 ||||| | | | ||||| ||| ||||||||| | |||| | ||| |||||||| | Sbjct 1742998 AAAATTCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAACTCTTTGGGT-C 1743056 Query 2138 TTTCTCCCTTAGTATATTGAGGGCCGCAGCTTTGGACCCTGAATTGATTGCCTCGGCATA 2197 ||||| ||| ||| | | | | | || | |||| ||||| || || | | || Sbjct 1743057 ATTCTCTTTTATTATTTGTAATGTTGAATCTCTTGACCTAGAATTAATCGCTTTAGTGTA 1743116 Query 2198 TGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGATTTGGAAAACTCC 2257 | | || | ||| || ||| ||||| ||||||||||| ||||| ||| | | Sbjct 1743117 TACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATC 1743176 Query 2258 AAAGTCAAGGATGTCTCCGTCTTCTTCCATGTAGGATTTGACATC---GCTTGAGCTTTT 2314 | || | | |||||| || | ||| ||||| ||||| |||| | |||| ||| Sbjct 1743177 TCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGA---TTT 1743233 Query 2315 AGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGTTTGTAGGTCGAAGAA 2374 || |||| || ||||||| || | ||| | ||| | || ||| || || Sbjct 1743234 AGAAAATTGAACATTTTGATGGAATTGAATGGTTCTGTTAGGGTGATATATGTCAAAAAA 1743293 Query 2375 TCTGTTATTTTGGCATTTGAATTTGCCTTCGAACTGGATGAGGACATGCAGGTGAGGAGT 2434 || | ||| ||| |||||| ||| ||| ||||| || ||||||| || || Sbjct 1743294 TCATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTC 1743353 Query 2435 CCCATCTTCGTGTAGTTCTCTGCAAACTCTGATGAACAGTTTATTTGTAGGTGTTTCTAG 2494 ||| | |||||||||| |||| ||||| ||||| | ||||||||| | || Sbjct 1743354 CCCGTTGCTGTGTAGTTCTTTGCACACTCTTATGAATTTTAGATTTGTAGGGTAGTTGAG 1743413 Query 2495 GTTTTTAATTTGGGAAAGGGTTTCTTCTTTTGTGAGTGAGCAGTGAGGGTATGTGAGGAA 2554 | |||| | || ||| | || ||||||||||| || || ||| | |||||||| Sbjct 1743414 GCTTTTGAGATGATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAA 1743473 Query 2555 ATAGTTCTTGGCATTTATT 2573 || || ||| ||||||| Sbjct 1743474 ATGATTTTTGCTATTTATT 1743492 Score = 84.2 bits (92), Expect = 4e-13 Identities = 152/218 (70%), Gaps = 7/218 (3%) Strand=Plus/Plus Query 1287 TTTCCTCAGGTAGTGGTTGAATTGGATCCTGACTTCGATGATGTCCTTGTTCATGTTGAA 1346 |||||| || | || |||||| || ||| || ||| |||||||| | ||| |||| || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1347 TGGTCGTTGTAGGTGCTTTAGG---ATCTTGAAATATAGGGGATTTGGAACTTCCCAGAT 1403 | ||| | | || ||| | ||||||||||| |||| |||||| | |||||| Sbjct 1741936 TTGTC-TCCTC--TGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGG 1741992 Query 1404 AAATACGCCATTCTGAGCTTGAGCTGCAGTGATGGGTTCCCCTGTGTGTGAATCCATGGT 1463 | |||| ||||| | ||||| ||||| ||||||| ||||| ||||||| || Sbjct 1741993 ATATACACCATTGTTGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGT 1742051 Query 1464 TGTGGCAGTTGATGTGTCTGTATATTGAGCATCCACAG 1501 | ||||| |||||| ||| | ||| |||||| Sbjct 1742052 TCCTACAGTTAATGTGTTGGTAATATATGCAACCACAG 1742089 >seq3069 Length=10854949 Score = 93.3 bits (102), Expect = 7e-16 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 1285 GCTTTCCTCAGGTAGTGGTTGAATTGGATCCTGACTTCGATGATGTCCTTGTTCATGTTG 1344 |||||||| |||| | ||||||||| ||| || || |||||||| | || |||| Sbjct 3754405 GCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTA 3754464 Query 1345 AATGGTCGTTGTAGGTGCTTTAGGATCTTGAAATATAGGGGATTTGGAACTTCCCAGATA 1404 ||||||| |||| | | ||||||||||||||||||||| ||||| || ||| Sbjct 3754465 AATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATA 3754524 Query 1405 AATACGCCATTCTGAGCTTGAGCTGCAGTGATGGGTTCCCCTGTGTGTGAATCCATGGTT 1464 ||||| |||| | | ||| | ||||| || ||| ||| | ||| ||| ||| Sbjct 3754525 TATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTT 3754584 Query 1465 GTGGCAGTTGATGTGTCTGTATATTGAGCATCCACA 1500 | ||| || |||| | ||| || ||| ||||| Sbjct 3754585 CTTGCAATTAATGTCTTGGTAGTATGTGCAACCACA 3754620 >seq1694 Length=789422 Score = 82.4 bits (90), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 8/229 (3%) Strand=Plus/Minus Query 2349 CTGCTTGGGGTTTGTAGGTCGAAGAATCTGTTATTTTGGCATTTGAATTTGCCTTCGAAC 2408 ||| | ||| |||||| |||||| || | | ||| ||||| |||||| ||| |||| Sbjct 588266 CTGTTAGGGTTTTGTATGTCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAAC 588207 Query 2409 TGGATGAGGACATGCAGGTGAGGAGTCCCATCTTC-GTGTAGTTCTCTGCAAACTCTGAT 2467 |||| || || |||| || || |||| | | ||| ||||||||||| || || || Sbjct 588206 TGGAGAAGTACGTGCAAATGTGGT-TCCCCGGTGCTGTGCAGTTCTCTGCACACACTTAT 588148 Query 2468 GAACAGTTT---ATTTGTAGGTGTTTCTAGGTTTTTAATTTGGGAAAGGGTTTCTTCTTT 2524 ||| ||| ||||||| | | |||||||| | || ||| || ||||| Sbjct 588147 GAA---TTTGAAATTTGTAAGATAGTTGAGGTTTTTGAGATGATGAAGAACATCATCTTT 588091 Query 2525 TGTGAGTGAGCAGTGAGGGTATGTGAGGAAATAGTTCTTGGCATTTATT 2573 || ||| || || ||| | |||||||||||||| | | ||||||| Sbjct 588090 TGAGAGAGAACATCTTGGGAAAGTGAGGAAATAGTTTTAGCTATTTATT 588042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8674884949268