Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_007965.1 Length=2557 Score E Sequences producing significant alignments: (Bits) Value seq519 123 4e-25 seq1694 86.0 1e-13 seq3069 78.8 2e-11 >seq519 Length=3254320 Score = 123 bits (136), Expect = 4e-25 Identities = 250/363 (69%), Gaps = 6/363 (2%) Strand=Plus/Plus Query 2040 TGCTGACCTCCTCTAGCAGATCTTCCGTCGATCTGGAATTGTCCCCATTCAATTGTA-TC 2098 |||| || ||| |||||||||||||| || || || || | | || || | ||| || Sbjct 1743133 TGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTA-CGTAGTC 1743191 Query 2099 TCCGTCCTTGTCGATGTAGGACTTGACATCGGAGCTGGATTTAGCTCCCTGAATGTTCGG 2158 ||| ||||| |||||||| || || |||| ||| | ||||||| |||| || | Sbjct 1743192 TCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTG 1743251 Query 2159 ATGGAAATGTGCTGACCTGGTTGGG-GATACCAAATCGAAGAATCTGTTATTCGTGCAGT 2217 |||||| || | ||| | ||| |||| | || || |||| | ||| ||||| Sbjct 1743252 ATGGAATTGAATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAAC 1743310 Query 2218 TGTATTTTCCTTCGAACTGGATAAGCACATGAAGATGAGGTTCCCCATTATCGTGAAGCT 2277 | |||| ||| ||| |||||||| ||||| | ||| |||||||| || ||| || | Sbjct 1743311 AGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTT 1743370 Query 2278 CTCTACAGA-TCTTGATGAATTTTTTGTTTACAGGGGTGTGCAGAGCTTTGATTTGGGAC 2336 || | || | |||| ||||||||| ||| |||| || || ||||| || Sbjct 1743371 CTTTGCACACTCTT-ATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGA 1743429 Query 2337 AGTGCTTCTTCTTTGGCTAATGAACATATAGGGTATGTGAGGAAATAGTTTTTGGCTTTT 2396 || || || ||||| | | |||||| | ||| | |||||||||| |||||| ||| Sbjct 1743430 AGAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTT 1743489 Query 2397 ATT 2399 ||| Sbjct 1743490 ATT 1743492 Score = 118 bits (130), Expect = 2e-23 Identities = 172/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 1416 AATTTTGCATTGTGGATCGTCCACGCTCTGAGAGATGCGTTTTCATCTTTATCGAGGAAG 1475 |||| ||||| || | | |||| |||||| | | ||||| || ||||| ||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1476 TCTTTATAGCTAGCCCCCTCTCCTGGATTGCACAGCACGATTGAGGGTATTCCTCCTTTA 1535 ||||||||| || ||||| | | ||| ||||| |||||||| || || || |||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1536 GTTTGAACTGGCTTCCCGTATTTACAGTTGGACTGCCAGTCCTTTTGGGCCCCTATCAAT 1595 ||| ||| | |||| | || || || ||||| || ||||| |||| |||||| Sbjct 1742372 ATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAAT 1742431 Query 1596 TCTTTCCAATGCT---TTAAT-TTCAAATAATTAGGGCTTATGTCATCAATGACGTTATA 1651 ||||||||||||| | || || || || | || || ||||||||||| ||||| Sbjct 1742432 TCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATA 1742491 Query 1652 T 1652 | Sbjct 1742492 T 1742492 Score = 100 bits (110), Expect = 5e-18 Identities = 160/219 (73%), Gaps = 12/219 (5%) Strand=Plus/Plus Query 1114 TTCCTCAGGTTGTAGTTGAACCGTATTTGGATGGTGTAT-AT-TC-TGGTTGTGGTGTAT 1170 ||||| || ||||||||||| |||| ||||| | ||| || || ||||||| || || Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATT-TCTATGATGTCGTGGTTGTTGT-TAA 1741934 Query 1171 ATTGGCTCCTCCACTT--GGATTATCTTGAAATAGAGGGGATTTGGAACCTCCCAGATAA 1228 |||| |||||| || | |||||||||||||||||| |||||| | ||||| | Sbjct 1741935 ATTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGAT 1741994 Query 1229 AAACGCCATTCATTGCTTGATGAGC--AGTGATGGGTTCCCCTGTGCGTGAATCCATGGT 1286 | || ||||| |||| ||||| ||||| ||||||| ||| | ||||||| || Sbjct 1741995 ATACACCATT-GTTGC--ACTGAGCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGT 1742051 Query 1287 TTCTGCAGTTGATGTGTACGTAAATTGAACAGCCACAGT 1325 | || ||||| |||||| |||| | || ||||||| Sbjct 1742052 TCCTACAGTTAATGTGTTGGTAATATATGCAACCACAGT 1742090 >seq1694 Length=789422 Score = 86.0 bits (94), Expect = 1e-13 Identities = 147/206 (71%), Gaps = 7/206 (3%) Strand=Plus/Minus Query 1123 TTGTAGTTGAACCGTATTTGGATGGTGTATATTCTGGTTGTGGT-GTATATTGGC-TCCT 1180 |||||||||||| |||||||||| | |||| | | || || || || | ||| |||| Sbjct 596641 TTGTAGTTGAACTGTATTTGGATC-TCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCT 596583 Query 1181 CCACTT--GGATTATCTTGAAATAGAGGGGATTTGGAACCTCCCAGATAAAAACGCCATT 1238 | | | | |||||||||||||||| ||||||| || ||||| | | |||||||| Sbjct 596582 CTAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATT 596523 Query 1239 CATTGC-TTGATGAGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTTCTGCAGTTG 1297 |||| || |||||| ||||||| |||| ||||||| ||| ||||| || Sbjct 596522 -GTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATTA 596464 Query 1298 ATGTGTACGTAAATTGAACAGCCACA 1323 || ||| |||| || || ||||| Sbjct 596463 ATATGTTGGTAATATGTGCAACCACA 596438 >seq3069 Length=10854949 Score = 78.8 bits (86), Expect = 2e-11 Identities = 170/244 (70%), Gaps = 9/244 (4%) Strand=Plus/Plus Query 1064 ATGTCGTCCAGATTTGGAAGTTCAGGTATGCTTTGTGTAGACTCAACGCCTTCCTCAGGT 1123 ||||||||||||| | ||| | |||| || || | |||| || ||||| |||| Sbjct 3754358 ATGTCGTCCAGATCTTGAAAAATATCCATGCCTTCTGAAATTTCAAGGCTTTCCTGAGGT 3754417 Query 1124 TGTAGTTGAACCGTATTTGGATGGTGTAT-AT-TC-TGGTTGTGGTGTATATTGGCTCCT 1180 || ||||||| |||| ||||| | ||| || || |||| || || || || | ||||| Sbjct 3754418 TGAAGTTGAATTGTATCTGGAT-CTCTATGATGTCGTGGTCGTTGT-TAAATGGTCTCCT 3754475 Query 1181 CCACTTGGA--TTATCTTGAAATAGAGGGGATTTGGAACCTCCCAGATAAAAACGCCATT 1238 | | | ||| ||||||||| ||||||||||| || || || ||| | ||| |||| Sbjct 3754476 CTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATATATACGTCATT 3754535 Query 1239 CATTGC-TTGATGAGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTTCTGCAGTTG 1297 |||| | | | ||||| || ||| ||||| ||| ||| ||| |||| || Sbjct 3754536 -GTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTTCTTGCAATTA 3754594 Query 1298 ATGT 1301 |||| Sbjct 3754595 ATGT 3754598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8073306797124