Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_008058.1 Length=2614 Score E Sequences producing significant alignments: (Bits) Value seq1129 131 3e-27 seq519 116 6e-23 seq1694 105 1e-19 >seq1129 Length=1508174 Score = 131 bits (144), Expect = 3e-27 Identities = 267/390 (68%), Gaps = 10/390 (3%) Strand=Plus/Minus Query 1474 AATTCTGCATTGTGATGTGTCCACGCCTTGAGATGTGAGTTTTCCTGTTTGTCGAGGTAG 1533 ||||||||||| || | ||| | |||||| ||||||| ||| || ||| | Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1534 TATTTATAGCTAGCCCCCTCACCAGGATTGCATAGCACGATTGATGGAATGCCACCTTTA 1593 | |||||||| || || ||||| ||||| || | | ||||||||| | | ||||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1594 ATTTGAATGGGTTTCCCGTATTTACAGTTGGTCTGCCAGTCTGTCTGGGCCCCAATGAGC 1653 ||| ||| ||||||||| || || || || | ||||| ||| | | | ||||||| | Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAATCT-TTTTGCCCCCAATCAAA 679276 Query 1654 TCTTTCCAGTGTTTCATCTTT-AGATAGTGCGGTGGTACGTCATCAATGACGTTGTACAT 1712 |||||| | || ||||||||| || |||| || | ||| ||||| ||||| || || | Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTAAGTG-GGAGTTACATCATCTATGACATTATATGT 679217 Query 1713 AACATCGTTTGAGTAAACTCTAGAATTGAAATCTA---GATGACCACTCAAATAATTATG 1769 |||| || | | ||| |||||||||| |||| || | | |||||||| Sbjct 679216 TGCATCATTGTGGAATACTGATTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATG 679157 Query 1770 AATTCCTAATGAACGAGCCCACATCGTCTTTCCCGTTCTTGAAT--CACCTTCGATGATG 1827 | | | ||| || ||| | | || || || ||| || | ||||| ||||| Sbjct 679156 ACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTC--GACTTGGGCCTTCAATGATT 679099 Query 1828 ATACTGATAGGTCTTAATGTCCGCGCAGCG 1857 ||||| ||||||| || || |||| || Sbjct 679098 ATACTTTTAGGTCTATCTGGCCACGCATCG 679069 >seq519 Length=3254320 Score = 116 bits (128), Expect = 6e-23 Identities = 195/279 (70%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 1474 AATTCTGCATTGTGATGTGTCCACGCCTTGAGATGTGAGTTTTCCTGTTTGTCGAGGTAG 1533 ||||| ||||| || | |||| ||||||| | ||||||| || || ||| | Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1534 TATTTATAGCTAGCCCCCTCACCAGGATTGCATAGCACGATTGATGGAATGCCACCTTTA 1593 | ||||||| || ||||||| ||| ||| | ||||||||||| |||||||||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1594 ATTTGAATGGGTTTCCCGTATTTACAGTTGGTCTGCCAGTCTGTCTGGGCCCCAATGAGC 1653 |||| || | |||||| | || || || | ||||| ||| | || ||||||| | Sbjct 1742372 ATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAAT 1742431 Query 1654 TCTTTCCAGTG----TTTCATCTTTAGATA-GTGCGGTGGTACGTCATCAATGACGTTGT 1708 |||||||| || | |||||||| || ||| || | ||| ||||||||||| || | Sbjct 1742432 TCTTTCCAATGCTACCTACATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTAT 1742490 Query 1709 ACATAACATCGTTTGAGTAAACTCTAGAATTGAAATCTA 1747 | | |||| || || | ||| |||||||||| Sbjct 1742491 ATGTTGCATCATTGCAGAATACTGATTTGTTGAAATCTA 1742529 Score = 82.4 bits (90), Expect = 1e-12 Identities = 240/358 (67%), Gaps = 9/358 (3%) Strand=Plus/Plus Query 2098 TGCTGACCTCCTCTAGCAGATCTGCCATCGATTTGAAATTCTCCCCATTCGAGGGTATCT 2157 |||| || ||| ||||||||||| ||||| |||||||| || | || || | | ||| Sbjct 1743133 TGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCT 1743192 Query 2158 CCATCTTTGTCGATATATGATTTGACATCGGAACTAGATTTAGCTCCCTGAATGTTCGGA 2217 || || || ||||| |||||||| |||| || | ||||||| |||| || || Sbjct 1743193 CCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGA 1743252 Query 2218 TGGAAATGTGCTGATCTGGTTGGG-GATACCAGATCGAACTGTCGTTCATTCGTGATCTG 2276 ||||| || | |||| | ||| |||| | || || || || ||| ||| Sbjct 1743253 TGGAATTGAATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACA 1743311 Query 2277 GACTTTTCCT-TCAAGTTGGACAAGGGCATGGAGATGAGGTTTCCCATTCTCGTGAAGCT 2335 || ||| ||| | ||| |||| ||| |||| | ||| |||| ||| || ||| || | Sbjct 1743312 GAATTTACCTGTGAAG-TGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTT 1743370 Query 2336 CTCTGCA-AATCTTGATATATCGTTTATTCG-AAGTTAGTTGTATTGATTGTAATTGCTC 2393 || |||| | |||| || || | ||| | | | |||||| | || | || | Sbjct 1743371 CTTTGCACACTCTT-ATGAATTTTAGATTTGTAGGGTAGTTG-AGGCTTTTGAGATGATG 1743428 Query 2394 TAATGCTTCATCTTTAGTAAGAGAGCATAATGGGTATGTTAGGAATATATTTTTTGCT 2451 | || |||||||| || || || ||| |||| | || ||||| || |||||||| Sbjct 1743429 AAGAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAA-ATGATTTTTGCT 1743485 >seq1694 Length=789422 Score = 105 bits (116), Expect = 1e-19 Identities = 206/299 (69%), Gaps = 4/299 (1%) Strand=Plus/Minus Query 1474 AATTCTGCATTGTGATGTGTCCACGCCTTGAGATGTGAGTTTTCCTGTTTGTCGAGGTAG 1533 |||| |||||| || | ||||| |||||| ||||||| || || || | Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1534 TATTTATAGCTAGCCCCCTCACCAGGATTGCATAGCACGATTGATGGAATGCCACCTTTA 1593 | ||||||| || || ||||| ||||| || | |||||||||| ||| ||| |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1594 ATTTGAATGGGTTTCCCGTATTTACAGTTGGTCTGCCAGTCTGTCTGGGCCCCAATGAGC 1653 ||||||| ||||||| || || || | | ||||| ||| | || ||||||| | Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1654 TCTTTCCAGTGTTTCATCTTT-AGATAGTGCGGTGGTACGTCATCAATGACGTTGTACAT 1712 |||||| | || ||||||||| || |||| || | | | ||||||||| | || | Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTG-GGAGCTGCATCATCAATGTCATTATCTGG 599634 Query 1713 AACATCGTTTGAGTAAACTCTAGAATTGAAATC-TAGATGACCACTCAAATAATTATGA 1770 |||| || || | ||| |||||||| ||| ||||| || | ||||||||| Sbjct 599633 TGCATCATTCTAGAATACTGATTTGTTGAAATCATAG-TGACCGCTTATGTAATTATGA 599576 Score = 80.6 bits (88), Expect = 4e-12 Identities = 89/119 (75%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 1513 TTTTCCTGTTTGTCGAGGTAGTATTTATAGCTAGCCCCCTCACCAGGATTGCATAGCACG 1572 ||||||| ||| || | | | | | | ||| || || |||| ||||||| | ||| Sbjct 596237 TTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACG 596178 Query 1573 ATTGATGGAATGCCACCTTTAATTTGAATGGGTTTCCCGTATTTACAGTTGGTCTGCCA 1631 |||||||| |||||||||||||||| || ||||||||| || || || || | ||||| Sbjct 596177 ATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATTACTTTGCCA 596119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8255700173040