Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_008059.1 Length=2605 Score E Sequences producing significant alignments: (Bits) Value seq1129 129 1e-26 seq1694 127 3e-26 seq519 122 1e-24 >seq1129 Length=1508174 Score = 129 bits (142), Expect = 1e-26 Identities = 262/385 (68%), Gaps = 8/385 (2%) Strand=Plus/Minus Query 1468 TGCATTCTTGATGGTCCAGTTCCTGAGGGAGGTGTTTTCCTCCTTGTTCAGGAAATCTTT 1527 |||||| | || ||| | ||| |||||| |||||||| || | ||||||||||| Sbjct 679449 TGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTT 679390 Query 1528 ATAGCTAGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCACCTTTAATTTG 1587 ||||| ||||| ||||| ||||| || | | ||||||||||| |||||||||| | Sbjct 679389 ATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAG 679330 Query 1588 AACTGGCTTTCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTT 1647 ||| || || || || |||||||| ||||| | ||| | | |||| | | ||||| Sbjct 679329 AACGGGTTTCCCATACTTGCAATTACTTTGCCAAT-CTTTTTGCCCCCAATCAAATCTTT 679271 Query 1648 CCAGTGCTTTAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTC 1707 | | ||||| | ||||| || || | || ||||| ||||| ||||| | || Sbjct 679270 CTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATATGTTGCATC 679211 Query 1708 GTTTGAGTACACTCTTGGGTTGAAGTCCA---GATGTCCACTAAGGTAATTGTGTGGGCC 1764 || | | ||| | |||||| || | |||| || ||| |||||| || || | Sbjct 679210 ATTGTGGAATACTGATTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATGACGGTC 679151 Query 1765 TAAGGCACGAGCCCACATCGTCTTCCCTGTCCTCGAGT--CACCTTCTATGATGATACTT 1822 | | || ||| | | || || ||| | |||| | ||||| ||||| |||||| Sbjct 679150 GAGTGAGCGGGCCAAAGTAGTTTTGCCTAT--TCGACTTGGGCCTTCAATGATTATACTT 679093 Query 1823 ACTGGTCTCTCAGGCCGCGCAGCGG 1847 ||||| || |||| |||| ||| Sbjct 679092 TTAGGTCTATCTGGCCACGCATCGG 679068 >seq1694 Length=789422 Score = 127 bits (140), Expect = 3e-26 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 1468 TGCATTCTTGATGGTCCAGTTCCTGAGGGAGGTGTTTTCCTCCTTGTTCAGGAAATCTTT 1527 |||||| | || ||||| ||| |||||| |||||||| | | | |||||||||| Sbjct 599867 TGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTT 599808 Query 1528 ATAGCTAGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCACCTTTAATTTG 1587 |||| ||||| ||||| ||||| || | |||||||||| ||| ||| ||||||||| Sbjct 599807 ATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTG 599748 Query 1588 AACTGGCTTTCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTT 1647 ||| | || || || ||||||| ||||| || || || |||| | || |||||| Sbjct 599747 AACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTT 599688 Query 1648 CCAGTGCTTTAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTAT 1697 | | ||||| | ||||| || || || | ||||||||| | |||| Sbjct 599687 CTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTAT 599638 Score = 95.1 bits (104), Expect = 2e-16 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1502 TTTTCCTCCTTGTTCAGGAAATCTTTATAGCTAGCACCCTCACCAGGATTGCAAAGCACG 1561 |||||||| || | || ||||||| | ||| ||||| |||| ||||||| | ||| Sbjct 596237 TTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACG 596178 Query 1562 ATTGATGGGATCCCACCTTTAATTTGAACTGGCTTTCCGTATTTGCAATT 1611 ||||||||||| ||||||||||||| ||| || || || || |||||||| Sbjct 596177 ATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATT 596128 >seq519 Length=3254320 Score = 122 bits (134), Expect = 1e-24 Identities = 150/202 (74%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 1502 TTTTCCTCCTTGTTCAGGAAATCTTTATAGCTAGCACCCTCACCAGGATTGCAAAGCACG 1561 |||||||| || | ||||||||||||||| |||||||||| ||| ||| | ||| Sbjct 1742291 TTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCTCACTTAGATAGCACAATACG 1742350 Query 1562 ATTGATGGGATCCCACCTTTAATTTGAACTGGCTTTCCG-TATTTGCAATTTGACTGCCA 1620 ||||||||||| ||||||||||||| ||| | |||||| | |||||||| ||||| Sbjct 1742351 ATTGATGGGATGCCACCTTTAATTTAAAC-GAGTTTCCGAAACTTGCAATTACTTTGCCA 1742409 Query 1621 GTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTG----CTTTAGCTTTAGATATTGCGGTG 1676 || || || |||| | | ||||||||| || || | ||||| ||| || | Sbjct 1742410 ATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAG 1742469 Query 1677 CGACGTCATCAATGACGTTATA 1698 | || ||||||||||| ||||| Sbjct 1742470 CTACATCATCAATGACATTATA 1742491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8226901218948