Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_008236.1 Length=2768 Score E Sequences producing significant alignments: (Bits) Value seq519 122 2e-24 seq3069 104 4e-19 seq2957 93.3 7e-16 seq1694 87.8 3e-14 seq1129 80.6 5e-12 >seq519 Length=3254320 Score = 122 bits (134), Expect = 2e-24 Identities = 245/361 (68%), Gaps = 2/361 (1%) Strand=Plus/Plus Query 2230 ACCTCCTCTAGCTGATCGTCCATCGATCTGGAAAACTCCAGAATCAAGGATGTCTCCGTC 2289 || ||| ||||| |||| |||||| || || ||| | | |||| | | |||||| || Sbjct 1743138 ACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTC 1743197 Query 2290 TTTCTCCATGTAGGTTTTGACATCAGACGAGCTTTTAGCTCCCTGAATGTTTGGATGGAA 2349 || || ||||| | ||| |||| ||| | ||||| |||| ||| ||||||| Sbjct 1743198 CTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAA 1743257 Query 2350 ATGTGCTGACCTACTTGGG-GATGTGAGATCGAAGAATCTATTATTTTTGCATTGGAATT 2408 || | || | ||| ||| | | || || |||| | ||| |||| ||||| Sbjct 1743258 TTGAATGGTTCTGTTAGGGTGATATATG-TCAAAAAATCATTGATTGGTGCAACAGAATT 1743316 Query 2409 TTCCTTCGAACTGGATGAGAACATGCAGGTGAGGATTCCCATCGTTGTGTAGTTCTCTGC 2468 | ||| ||| ||||| || ||||||| || || | ||| | | ||||||||||| ||| Sbjct 1743317 TACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGC 1743376 Query 2469 AGATTCTGATGAATAATATATTAGTTGGGGTTTCTAGGGTTTGTAATTGTGAAAGTGCTT 2528 | | ||| |||||| || ||| || ||| | ||| ||| | || ||| || | Sbjct 1743377 ACACTCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCAT 1743436 Query 2529 CTTCTTTTGTAAGTGAGCACTGTGGGTATGTTAGAAAATAATTTTTTGCATTTATTCTGA 2588 | |||||||| || || || |||| | || || |||| |||||| ||||||||| | Sbjct 1743437 CATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATTCTAA 1743496 Query 2589 A 2589 | Sbjct 1743497 A 1743497 Score = 118 bits (130), Expect = 2e-23 Identities = 331/495 (67%), Gaps = 15/495 (3%) Strand=Plus/Plus Query 2102 AAATTACTATTTAAATTATGAAACTGTAAAACATAA-TCTTTGGGAGCTTTCTCCCTTAA 2160 |||||| ||| ||||||||| | |||| || || |||||||| ||||||| ||| Sbjct 1748825 AAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCTTTGGGT-CTTTCTCTTTTAT 1748883 Query 2161 TATATTGAGGGCCGAAACT-TTGGACCCTGAGTTGATTGCCTCGGCATACGCGTCGTTTG 2219 ||| | | || | | || |||| | | | || || || || || || | || || Sbjct 1748884 TATTTGTAATGCTGCATCTCTTGGTGCATAA-TTAATCGCTTCAGCGTATACATC---TG 1748939 Query 2220 CAG--ATTGGCA-ACCTCCTCTAGCTGATCGTCCATCGATCTGGAAAACTCCAGAATCAA 2276 || ||| | || ||| ||| | |||| |||||| || || ||| | | |||| | Sbjct 1748940 CAACTATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTA 1748999 Query 2277 GGATGTCTCCGTCTTTCTCCATGTAGGTTTTGAC--ATCAGACGAGCTTTTAGCTCCCTG 2334 |||||| || || || ||||| | ||| || |||| | | |||||| || Sbjct 1749000 CATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTG 1749059 Query 2335 AATGTTTGGATGGAAATGTGCTGACCTACTTGGGGATGTGAGATCGAAGAATCTATTATT 2394 || ||||||||||| || | ||| | ||| ||| | ||||| || | | ||| Sbjct 1749060 AACATTTGGATGGAATTGAATGGTTCTATTAGGGTTTGTATG-TCGAAAAACCATTGATT 1749118 Query 2395 TTTGCATTGGAATTTTCCTTCGAACTGGATGAGAACATGCAGGTGAGGATTCCCATCGTT 2454 |||| |||||| ||| ||||| || || ||||||| || || ||||| | | | Sbjct 1749119 GGTGCAGCAGAATTTCCCTGTGAACTAGA-GATTACATGCAAATGTGG-TTCCCGTTGCT 1749176 Query 2455 GTGTAGTTCTCTGCAGATTCTGATGAATAATATATTAGTTGGGGTTTCTAGGGTTTGTAA 2514 ||||||||||||||| | | | |||||| | ||| || ||| | ||| ||| | Sbjct 1749177 GTGTAGTTCTCTGCACACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAG 1749236 Query 2515 TTGTGAAAGTGCTTCTTCTTTTGTAAGTGAGCACTGTGGGTATGTTAGAAAATAATTTTT 2574 || ||| | || |||||||| ||| | || |||| | || |||||||||||||| Sbjct 1749237 ATGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTT 1749296 Query 2575 TGCATTTATTCTGAA 2589 ||||||||| || Sbjct 1749297 GCTATTTATTCTAAA 1749311 Score = 91.5 bits (100), Expect = 3e-15 Identities = 156/223 (70%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 1299 CTCAGGTTGTAGTTGAATTGAATCTGGACGGTAATCTTGTCTTGTTCTTTGTTGAATGGC 1358 || || ||||||||||| || ||||||| || |||| || | ||||| ||| | Sbjct 1741880 CTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAATTGT 1741939 Query 1359 CTGCTGAGGTGATCTGTTATCTTGAAATATAGGGGATTTGGCACCGTCCA--GATATACA 1416 || || ||| ||||||||||||||| |||| |||||| | ||| |||||||| Sbjct 1741940 CTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATATACA 1741999 Query 1417 CGCCATTCTTTGCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATCGTTGGCA 1476 ||||| || |||||| ||||| ||||||| ||| | ||||||||||| | Sbjct 1742000 --CCATTGTTGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTCCTA 1742056 Query 1477 CAGTGTATTCCTATGTATATTGTGCAACCACAGTCTAGGTCAA 1519 |||| || | ||| | |||||||||||| || |||| Sbjct 1742057 CAGTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAA 1742099 >seq3069 Length=10854949 Score = 104 bits (114), Expect = 4e-19 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 1299 CTCAGGTTGTAGTTGAATTGAATCTGGACGGTAATCTTGTCTTGTTCTTTGTTGAATGGC 1358 || |||||| |||||||||| ||||||| || |||| || || ||||| ||||| Sbjct 3754411 CTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTAAATGGT 3754470 Query 1359 CTGCTGAGGTGATCTGTTATCTTGAAATATAGGGGATTTGGCACCGTCCAGATATACACG 1418 || || |||| ||||| ||||||||||||||||||||| || || ||||| ||| Sbjct 3754471 CTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATATATACG 3754530 Query 1419 CCATTCTTTGCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATCGTTGGCACA 1478 |||| || || ||| | ||||| || ||| ||||| ||| ||| ||| || Sbjct 3754531 TCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTTCTTGCA 3754590 Query 1479 GTGTATTCCTATGTATATTGTGCAACCACA 1508 | || || ||| |||||||||||| Sbjct 3754591 ATTAATGTCTTGGTAGTATGTGCAACCACA 3754620 >seq2957 Length=4215098 Score = 93.3 bits (102), Expect = 7e-16 Identities = 152/218 (70%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 1302 AGGTTGTAGTTGAATTGAATCTGGACGGTAATCTTGTCTTGTTCTTTGTTGAATGGCCTG 1361 ||||||| |||||| || ||||||| | || ||| ||| |||||||||| || Sbjct 1238761 AGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTGTTGAATGATCTC 1238820 Query 1362 CTGAGGTGATCTGTTATCTTGAAATATAGGGGATTTGGCACCGTCCAGATATACACGCCA 1421 || |||| ||||||||||||||| || ||||||| || | || |||| || || Sbjct 1238821 CTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAGGTATATACTTCA 1238880 Query 1422 TTCTTTGCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATCGTTGGCACAGTG 1481 || || |||||| ||| ||| | | | | ||||| ||||||| ||| | ||| Sbjct 1238881 TTGTTGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCATTGTTCATATAGTT 1238940 Query 1482 TAT-TCCTATGTATATTGTGCAACCACAGTCTAGGTCA 1518 || | | | |||| ||||||||||| | ||| ||| Sbjct 1238941 AATGTGCAAGTAATATGGTGCAACCACACTTTAGATCA 1238978 >seq1694 Length=789422 Score = 87.8 bits (96), Expect = 3e-14 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 1305 TTGTAGTTGAATTGAATCTGGACGGTAATCTTGTCTTGTTCTTTGTTGAATGGCCTGCTG 1364 ||||||||||| || || |||| || |||| || | ||||||||||| | || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1365 AGGTGATCTGTTATCTTGAAATATAGGGGATTTGGCACCGTCCAGATATACACGCCATTC 1424 ||| ||||||||||||||| || ||||||| || ||| ||| |||||||| Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1425 TTTGCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATCGTT 1472 || | |||| |||||| ||||||| |||| ||||||||||| Sbjct 596521 TTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTT 596474 >seq1129 Length=1508174 Score = 80.6 bits (88), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 9/205 (4%) Strand=Plus/Minus Query 1655 TCTTCATCAAGATATTCTATATAGGAGGCAGTTGGTCCTGGATTGCAAAGGAAGATTGTT 1714 |||| ||| || | ||| ||||| | ||| | |||||||| || | ||||||| | Sbjct 679409 TCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGAT 679350 Query 1715 GGGATTCCACCTTTAATTTGAATTGGCTTCCCATACTTTGTGTTGCTTTGCCAGTCTCGT 1774 |||| |||||||||| ||| || ||||||||||| || |||||||| ||| | Sbjct 679349 GGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAATCT-TT 679291 Query 1775 TGGGCCCCCATGAATTCCTTAAAGTGC-------TTTAGATAGTGCGGGTCTACGTCATC 1827 | | |||| || || || || | ||| || || |||| | || ||| ||||| Sbjct 679290 TTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGT-TACATCATC 679232 Query 1828 AATGACGTTGTACCATGCATCATTG 1852 ||||| || || |||||||||| Sbjct 679231 TATGACATTATATGTTGCATCATTG 679207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8745273051210