Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_008267.1 Length=2762 Score E Sequences producing significant alignments: (Bits) Value seq519 78.8 2e-11 >seq519 Length=3254320 Score = 78.8 bits (86), Expect = 2e-11 Identities = 132/190 (69%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 1328 TTTCCTCAGGTTGTGGTTGAACTGCAGCCGTATTGTTATCACGTCGTGGTTCGTGTTGAA 1387 |||||| || |||| |||||| || | | | ||| ||| | ||||||||| |||| || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1388 CGGCCGGCTGTGATGGCTGAGTATCTTGAAATAGAGGGGATTTTGAATCTCCCAAATATA 1447 | | || || | | ||||||||||||||||| |||| | | |||||| ||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1448 GACGCCATTCCTGGCTTGAGCTGCAGTGATGTACTCCCCTGTGCGTAAATCCATGATTAG 1507 || ||||| || ||||| ||||| | ||||| ||| | |||||||| || Sbjct 1741996 TACACCATTGTTGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTCC 1742054 Query 1508 CACAGTTTAT 1517 |||||| || Sbjct 1742055 TACAGTTAAT 1742064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8729282973664