Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_008299.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq519 111 3e-21 seq1129 87.8 3e-14 seq1694 86.0 1e-13 seq2957 84.2 4e-13 >seq519 Length=3254320 Score = 111 bits (122), Expect = 3e-21 Identities = 237/345 (69%), Gaps = 8/345 (2%) Strand=Plus/Plus Query 2236 CCTCTTGCAGATCTTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTC 2295 || || |||||||||||||| || ||||| || | || || | | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2296 TCCAGATAGGACTTGACGTCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGT 2355 || | || || || || | ||| ||||||||| |||| || ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2356 GCTGACCTGGTTGGG-GATACCAGGTCGAAGAATCGCTGATTTTGGCACTTGTATTTTCC 2414 | ||| | ||| |||| | ||| || |||| ||||| ||| | |||| || Sbjct 1743262 ATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2415 CTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCATGAAACTCTCTGCAGAT 2474 ||| ||||| || || || | ||| |||||||| || || | ||| |||| | Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2475 TTTAATGTATTTTTTGTTTACTGGGGT--TTGTAGGTTTTGGAATTGGGAAAGTGCTTCC 2532 | | ||| ||||| ||| | |||| ||| ||| ||| || || ||| || || Sbjct 1743381 TCTTATGAATTTTAGATTTG-TAGGGTAGTTG-AGGCTTTTGAGATGATGAAGAGCATCA 1743438 Query 2533 TCTTTGGTGAGAGAGCA-CTTGGGATAAGTGAGGAAATAATTTTT 2576 ||||| ||||| || || ||||||| |||||||||||| |||||| Sbjct 1743439 TCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTT 1743482 Score = 86.0 bits (94), Expect = 1e-13 Identities = 229/339 (68%), Gaps = 11/339 (3%) Strand=Plus/Plus Query 2243 CAGATCTTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGAT 2302 ||||||||||||| || ||||| || |||| || | |||||| ||||| || | | Sbjct 1748964 CAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGT 1749023 Query 2303 AGGACTTGACG--TCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGA 2360 | || || || || || |||||||||| |||| || |||||||| || | Sbjct 1749024 ATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGT 1749083 Query 2361 CCTGGTTGGGGATACCAGGTCGAAGAATCGCTGATTTTGGCACTTGTATTTTCCCTCGAA 2420 || || ||| | | |||||| || | ||||| ||| | |||| || ||| Sbjct 1749084 TCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAA 1749142 Query 2421 CTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCATGAAACTCTCTGCAGATTTTAAT 2480 || || || || || | ||| ||||||| | | || | |||||||| | ||| || Sbjct 1749143 CTAGA-GATTACATGCAAATGTGGTTCCCGTTGCTG-TGTAGTTCTCTGCACACTTTTAT 1749200 Query 2481 GTATTTTTTGTTTACTGGGGT--TTGTAGGTTTTGGAATTGGGAAAGTGCTTCCTCTTTG 2538 | |||| ||| | |||| ||| ||||||| || || ||| | || ||||| Sbjct 1749201 GAATTTAAGATTTG-TAGGGTAGTTG-AGGTTTTTGAGATGACGAAGAACATCATCTTTT 1749258 Query 2539 GTGAGAGAGCA-CTTGGGATAAGTGAGGAAATAATTTTT 2576 ||||| | || ||||||| ||||||| ||||||||||| Sbjct 1749259 GTGAGTAAACATCTTGGGA-AAGTGAGAAAATAATTTTT 1749296 Score = 84.2 bits (92), Expect = 4e-13 Identities = 130/180 (72%), Gaps = 7/180 (4%) Strand=Plus/Plus Query 1303 TTTCCTCAGGTTGTGATTGAACTGTATCTGGACAGTGATGATGTCTTGGTTCATGAGGAA 1362 |||||| || |||| ||||| |||||||||| |||||||| ||||| || || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1363 TGGCCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGATTTTGAACCTCCCA--GATA 1420 | | || | |||| |||||||||||||||||||| |||| | | ||||| |||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1421 AACACGCCATTCTGTGC-TTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGT 1479 ||| ||||| | ||| ||||| ||||| ||||||| ||| | ||||||| || Sbjct 1741996 TACA--CCATTGT-TGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGT 1742051 >seq1129 Length=1508174 Score = 87.8 bits (96), Expect = 3e-14 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 1303 TTTCCTCAGGTTGTGATTGAACTGTATCTGGACAGTGATGATGTCTTGGTTCATGAGGAA 1362 |||||| | ||||| |||||||||||||||| ||||||| ||| | || ||| Sbjct 693775 TTTCCTAAAGTTGTAGTTGAACTGTATCTGGATCTCTATGATGTTGTGGATGTTGTTGAA 693716 Query 1363 TGGCCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGATTTTGAACCTCCCAGATAAA 1422 || || | ||||| | |||||||||| ||||| ||||| ||| ||| ||||| || | Sbjct 693715 CGGTCTCCTCTGGTGTTGTGTTATCTTGTAATAG-GGGGAATTTAAACTTCCCAAGTATA 693657 Query 1423 CACGCCATTCTGTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGT 1479 |||||||| | | | || ||| ||| || | ||| || || ||||||| || Sbjct 693656 TACGCCATTATTTCACTAAGTCGCAATGA-GATATTCCCGGTACGAAAATCCATCGT 693601 >seq1694 Length=789422 Score = 86.0 bits (94), Expect = 1e-13 Identities = 226/339 (67%), Gaps = 6/339 (2%) Strand=Plus/Minus Query 2239 CTTGCAGATCTTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCC 2298 || ||||||||||||||||| ||||| || ||||| || | | |||||| ||||| || Sbjct 599257 CTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCTCCTTTTCA 599198 Query 2299 AGATAGGACTTGACGTCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCT 2358 | || || || || | ||| |||||| | ||||| | |||||||| || Sbjct 599197 ATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACACTTGGATGGAATTGAATA 599138 Query 2359 GACCTGGTTGGGGATACCAGGTCGAAGAATCGCTGATTTTGGCACTTGTATTTTCCCTCG 2418 | ||| | ||| | | |||||| || | |||| || | ||||||| | Sbjct 599137 GTTCTGTTAGGGTGTGGTATGTCGAA-AACCTTTGATAGGTTCAACAGAATTTTCCTGTG 599079 Query 2419 AACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCATGAAACTCTCTGCAGATTTTA 2478 || | || || ||||| | ||| |||||||| || | || |||| ||| | | | Sbjct 599078 AATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGTCTAATTCTCAGCACACTCTT 599019 Query 2479 ATGTATTTTTTGTTTACTGGGGT--TTGTAGGTTTTGGAATTGGGAAAGTGCTTCCTCTT 2536 ||| |||| |||| | | || ||| | |||| ||| || ||| | || |||| Sbjct 599018 ATGAATTTGAGATTTA-TAGCGTAGTTGGGGTTTTTTGAAATGATGAAGAACATCATCTT 598960 Query 2537 TGGTGAGAGAGCA-CTTGGGATAAGTGAGGAAATAATTT 2574 | ||||||||| ||||| | ||||| ||||||| ||| Sbjct 598959 TTAAGAGAGAGCATCTTGGTA-AAGTGTGGAAATAGTTT 598922 Score = 84.2 bits (92), Expect = 4e-13 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 1301 GCTTTCCTCAGGTTGTGATTGAACTGTATCTGGACAGTGATGATGTCTTGGTTCATGAGG 1360 |||||||| | || || ||||||| ||||| || |||||||| |||| || | Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1361 AATGGCCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGATTTTGAACCTCCCAGATA 1420 ||||| || | ||||| ||||||||||||||||||||||||| | || || || || Sbjct 600172 AATGGTCTCCTCTGGTGTCATGTTATCTTGAAATAGAGGGGATTTGGTACTTCTCAAGTA 600113 Query 1421 AACACGCCATT 1431 | ||| |||| Sbjct 600112 TATACGTCATT 600102 Score = 80.6 bits (88), Expect = 5e-12 Identities = 120/168 (71%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 1313 TTGTGATTGAACTGTATCTGGACAGTGATGATGTCTTGGTTCATGAGGAATGGCCTGTTG 1372 |||| ||||||||||| |||| || ||||| ||||| || |||||| | | Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1373 TGGTGCTCTGTTATCTTGAAATAGAGGGGATTTTGAACCTCCCAGATAAACACGCCATTC 1432 | ||| |||||||||||||||||| ||||| | || ||||| | | |||||||| Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1433 TGTGC-TTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGT 1479 | ||| |||| |||||| ||||||| |||| ||||||| || Sbjct 596521 T-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGT 596475 >seq2957 Length=4215098 Score = 84.2 bits (92), Expect = 4e-13 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 1298 AACGCTTTCCTCAGGTTGTGATTGAACTGTATCTGGACAGTGATGATGTCTTGGTTCATG 1357 || |||||| | ||||||| |||||||||||||||| ||||||| | || || Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1358 AGGAATGGCCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGATTTTGAACCTCCCAG 1417 ||||| || | ||||| |||||||||||||||| || ||||| | || ||| || Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAG 1238868 Query 1418 ATAAACACGCCATTCTGTGC-TTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCAT 1476 || | || |||| | ||| ||||| ||| ||| | | | | ||||| ||||||| Sbjct 1238869 GTATATACTTCATTGT-TGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCAT 1238927 Query 1477 GGT 1479 || Sbjct 1238928 TGT 1238930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8719683322300