Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_008304.1 Length=2613 Score E Sequences producing significant alignments: (Bits) Value seq1129 154 2e-34 seq519 143 4e-31 seq1694 134 2e-28 >seq1129 Length=1508174 Score = 154 bits (170), Expect = 2e-34 Identities = 246/351 (70%), Gaps = 4/351 (1%) Strand=Plus/Minus Query 1517 CATTTTCCTCTTTCTCGAGGAAATCTTTATATGAcccccccTCTCCTGGATTGCACAGCA 1576 ||||||||||||| || |||||||||||||| || | || || |||||||| |||| | Sbjct 679417 CATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATA 679358 Query 1577 CGATTGATGGGATACCTCCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCC 1636 ||||||||||| ||||||||| |||| || || ||||| || || || |||| Sbjct 679357 AGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCC 679298 Query 1637 AGTCCTTTTGGGCCCCAATCAATTCCTTCCAGTGCTTTAGCTTTAAGTATTGCGGATTGA 1696 | | ||||| | |||||||||| || ||| | ||||| | ||||||||| ||| | | Sbjct 679297 AAT-CTTTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTA 679239 Query 1697 CATCATCTATGACGTTATACTCCACTTGATTGGAGTATACCCTAGAATTGAAATCAA--- 1753 ||||||||||||| ||||| | | |||| | |||| |||||||| | Sbjct 679238 CATCATCTATGACATTATATGTTGCATCATTGTGGAATACTGATTTGTTGAAATCTAAGT 679179 Query 1754 GATGACCGCTCAGATAATTATGTGGGCCTAAAGCACGAGCCCACATTGTCTTGCCCGTTC 1813 |||| ||| | | |||||||| || | | | || ||| | | || ||||| ||| Sbjct 679178 GATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTC 679119 Query 1814 GTGAATCCCCTTCGACTATCAAACTAATCGGTCTCTCTGGCCGCGCAGCGG 1864 | ||||| | || | ||| | ||||| ||||||| |||| ||| Sbjct 679118 GACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq519 Length=3254320 Score = 143 bits (158), Expect = 4e-31 Identities = 176/240 (73%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 1480 AATTTAGCATTTTTTAATGTCCAGGCTCTCAGTGGTGCATTTTCCTCTTTCTCGAGGAAA 1539 |||| |||||||| || |||| | || | | |||||||||| || || |||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1540 TCTTTATATGAcccccccTCTCCTGGATTGCACAGCACGATTGATGGGATACCTCCTTTA 1599 |||||||| || | ||||| | | ||| ||||| |||||||||||||| || |||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1600 ATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCCAGTCCTTTTGGGCCCCAATCAAT 1659 |||| ||| | || | | | || || || ||||| || ||||| ||||||||||| Sbjct 1742372 ATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAAT 1742431 Query 1660 TCCTTCCAGTG----CTTTAGCTTTAAGTATTGCGGATTGACATCATCTATGACGTTATA 1715 || ||||| || || | |||||||||| ||| |||||||| ||||| ||||| Sbjct 1742432 TCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATA 1742491 >seq1694 Length=789422 Score = 134 bits (148), Expect = 2e-28 Identities = 185/259 (71%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 1517 CATTTTCCTCTTTCTCGAGGAAATCTTTATATGAcccccccTCTCCTGGATTGCACAGCA 1576 |||||||||||| || ||||||||||||| ||| | || || |||||||| |||| | Sbjct 599835 CATTTTCCTCTTCATCCGGGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATA 599776 Query 1577 CGATTGATGGGATACCTCCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCC 1636 ||||||||| ||| | | |||||||||||| | || ||||| || || | |||| Sbjct 599775 CGATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCC 599716 Query 1637 AGTCCTTTTGGGCCCCAATCAATTCCTTCCAGTGCTTTAGCTTTAAGTATTGCGGATTGA 1696 | || ||||| ||||||| ||||| ||| | ||||| | ||||||||| ||| Sbjct 599715 AATCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTG 599656 Query 1697 CATCATCTATGACGTTATACTCCACTTGATTGGAGTATACCCTAGAATTGAAATCAAGAT 1756 ||||||| ||| | |||| | | ||| || |||| ||||||||| | Sbjct 599655 CATCATCAATGTCATTATCTGGTGCATCATTCTAGAATACTGATTTGTTGAAATCATAGT 599596 Query 1757 GACCGCTCAGATAATTATG 1775 ||||||| | |||||||| Sbjct 599595 GACCGCTTATGTAATTATG 599577 Score = 95.1 bits (104), Expect = 2e-16 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 1517 CATTTTCCTCTTTCTCGAGGAAATCTTTATATGAcccccccTCTCCTGGATTGCACAGCA 1576 ||||||||||||| || | ||||||| | || || | || || | | ||||||||| | Sbjct 596239 CATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATA 596180 Query 1577 CGATTGATGGGATACCTCCTTTAATTTGAACCGGCTTTCCATATTTACAGTT 1628 ||||||||||||| || |||||||||| ||| || || ||||| || || || Sbjct 596179 CGATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATT 596128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8252500289252