Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_008316.1 Length=2767 Score E Sequences producing significant alignments: (Bits) Value seq519 129 1e-26 seq3069 107 3e-20 seq1694 93.3 7e-16 seq2957 91.5 3e-15 >seq519 Length=3254320 Score = 129 bits (142), Expect = 1e-26 Identities = 260/379 (69%), Gaps = 9/379 (2%) Strand=Plus/Plus Query 2216 CCTCTTGCAGATCTTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTG 2275 || || |||||||||||||| || ||||| || | || || | | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2276 TTGATGTAGGACTTGACGTCGGAACTTGATTTAGCTCCCTGAATGTTTGGATGGAAATGT 2335 | |||||| || || || | || ||||||||| |||| ||| ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2336 GTTGACCTGGTTGGG-GATACCAAGTCGAAGAATCGCTGATTCTTGCACTGGTATTTTCC 2394 | | ||| | ||| |||| | ||| || |||| ||||| |||| | |||| || Sbjct 1743262 ATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2395 CTCGAACTGGATAAGCACGTGGAGATGAGGGTTCCCATTTTGGTGTAGTTCTCGACAGAt 2454 ||| |||||||| || || | ||| || | ||| || |||||||||| || | Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2455 tttgatgtattttttgtttgttggtgtatctagggctttt-attttttcaagggtttctt 2513 | | ||| ||||| ||||| || ||| | ||||||| | | | ||| | || | Sbjct 1743381 TCTTATGAATTTTAGATTTGTAGG-GTAGTTGAGGCTTTTGAGATGATGAAGAGCATCAT 1743439 Query 2514 ctttgGCGAGAGAGCAGTCTGGATAAGTAAGGAAATAATTTTTGGCATTTATCTTAAAAC 2573 |||| | ||| || || ||| |||| ||||||| ||||||| |||||| |||| Sbjct 1743440 CTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATTCTAAA-- 1743497 Query 2574 GACTTGGTTGAGGCATTTT 2592 ||||| ||| |||||| Sbjct 1743498 -CCTTGG--GAGCCATTTT 1743513 Score = 100 bits (110), Expect = 5e-18 Identities = 161/228 (71%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 1280 TTTCCTCAGGTTGTGATTGAATCGGATTTGTACATGTATTATGTCGTGGTTCGTGTTGAA 1339 |||||| || |||| ||||| | || || | | ||| ||||||||||| |||| || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1340 GGGTCTGCTGTGGTGATGCATTATCTTGAAATATAGGGGATTTGGTACCGTCCA--GATA 1397 |||| || |||| | ||||||||||||| |||| |||||||| ||| |||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1398 TACGCGCCATTCTCGGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATCGTT 1457 || | ||||| | | ||||| ||||| ||||||| ||| | ||||||||||| Sbjct 1741996 TA--CACCATTGTTGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTT 1742052 Query 1458 GTGGCAGTTGATGGATATGTAATAGCTGCAGCCGCAGTTGAGATCAAT 1505 ||||| ||| | |||||| |||| || |||| | |||||| Sbjct 1742053 CCTACAGTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAAT 1742100 Score = 82.4 bits (90), Expect = 1e-12 Identities = 234/352 (66%), Gaps = 7/352 (2%) Strand=Plus/Plus Query 2223 CAGATCTTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTGTTGATGT 2282 ||||||||||||| || ||||| || |||| || | |||||| ||||| | |||| Sbjct 1748964 CAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGT 1749023 Query 2283 AGGACTTGA--CGTCGGAACTTGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGTTGA 2340 | || || | | || | |||||||||| |||| ||||||||||| || | | Sbjct 1749024 ATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGT 1749083 Query 2341 CCTGGTTGGGGATACCAAGTCGAAGAATCGCTGATTCTTGCACTGGTATTTTCCCTCGAA 2400 || || ||| | | |||||| || | ||||| |||| | |||| || ||| Sbjct 1749084 TCT-ATTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAA 1749142 Query 2401 CTGGATAAGCACGTGGAGATGAGGGTTCCCATTTTGGTGTAGTTCTCGACAGAttttgat 2460 || || | || || | ||| ||||||| || ||||||||||| || | ||| || Sbjct 1749143 CTAGA-GATTACATGCAAATG-TGGTTCCCGTTGCTGTGTAGTTCTCTGCACACTTTTAT 1749200 Query 2461 gtattttttgtttgttggtgta-tctagggcttttattttttcaagggtttcttctttgG 2519 | |||| ||||| || ||| | ||| ||| | | ||| || ||||| | Sbjct 1749201 GAATTTAAGATTTGTAGG-GTAGTTGAGGTTTTTGAGATGACGAAGAACATCATCTTTTG 1749259 Query 2520 CGAGAGAGCAGTCTGGATAAGTAAGGAAATAATTTTTGGCATTTATCTTAAA 2571 ||| | || ||| |||| || |||||||||||| |||||| |||| Sbjct 1749260 TGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATTCTAAA 1749311 >seq3069 Length=10854949 Score = 107 bits (118), Expect = 3e-20 Identities = 158/222 (71%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 1274 CAATGCTTTCCTCAGGTTGTGATTGAATCGGATTTGTACATGTATTATGTCGTGGTTCGT 1333 ||| |||||||| |||||| |||||| | || || | | ||| |||||||||| | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1334 GTTGAAGGGTCTGCTGTGGTG--ATGCATTATCTTGAAATATAGGGGATTTGGTACCGTC 1391 ||| || ||||| || ||||| ||| ||| |||||||||||||||||||||||| Sbjct 3754461 GTTAAATGGTCTCCTCTGGTGTCATG--TTAACTTGAAATATAGGGGATTTGGTACTTCT 3754518 Query 1392 CAGATATACGCGCCATTCTCGGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCC 1451 || ||||| || |||| | | | ||| | ||||| || ||| ||||| ||| | Sbjct 3754519 CAAATATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATAC 3754578 Query 1452 ATCGTTGTGGCAGTTGATGGATATGTAATAGCTGCAGCCGCA 1493 || ||| | ||| || ||| | ||| || |||| || || Sbjct 3754579 ATTGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACA 3754620 >seq1694 Length=789422 Score = 93.3 bits (102), Expect = 7e-16 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1290 TTGTGATTGAATCGGATTTGTACATGTATTATGTCGTGGTTCGTGTTGAAGGGTCTGCTG 1349 |||| ||||| | ||||| | | ||| ||||||||||| ||||||| ||| | || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1350 TGGTGATGCATTATCTTGAAATATAGGGGATTTGGTACCGTCCAGATATACGCGCCATTC 1409 | ||| | ||||||||||||| || |||||||||| ||| ||| ||||||| Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1410 TCGGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATCGTTGTGGCAGTTGAT 1469 | | |||| |||||| ||||||| |||| ||||||||||| ||| || || Sbjct 596521 TTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATTAAT 596462 Query 1470 GGATATGTAATAGCTGCAGCCGCA 1493 | |||||| |||| || || Sbjct 596461 ATGTTGGTAATATGTGCAACCACA 596438 Score = 86.0 bits (94), Expect = 1e-13 Identities = 234/355 (66%), Gaps = 4/355 (1%) Strand=Plus/Minus Query 2219 CTTGCAGATCTTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTGTTG 2278 || ||||||||||||||||| ||||| || ||||| || | | |||||| ||||| | Sbjct 599257 CTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCTCCTTTTCA 599198 Query 2279 ATGTAGGACTTGACGTCGGAACTTGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGTT 2338 ||||| || || || | || |||||| | ||||| |||||||||| || | Sbjct 599197 ATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACACTTGGATGGAATTGAATA 599138 Query 2339 GACCTGGTTGGGGATACCAAGTCGAAGAATCGCTGATTCTTGCACTGGTATTTTCCCTCG 2398 | ||| | ||| | | |||||| || | |||| | || | ||||||| | Sbjct 599137 GTTCTGTTAGGGTGTGGTATGTCGAA-AACCTTTGATAGGTTCAACAGAATTTTCCTGTG 599079 Query 2399 AACTGGATAAGCACGTGGAGATGAGGGTTCCCATTTTGGTGTAGTTCTCGACAGAttttg 2458 || | || ||| ||||| | ||| || | ||| || ||| || ||||| || | | | Sbjct 599078 AATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGTCTAATTCTCAGCACACTCTT 599019 Query 2459 atgtattttttgtttgttggtgtatctagggctttt--attttttcaagggtttcttctt 2516 ||| | ||| | || | | ||| | ||| |||| | | | ||| || |||| Sbjct 599018 ATG-AATTTGAGATTTATAGCGTAGTTGGGGTTTTTTGAAATGATGAAGAACATCATCTT 598960 Query 2517 tgGCGAGAGAGCAGTCTGGATAAGTAAGGAAATAATTTTTGGCATTTATCTTAAA 2571 | ||||||||| ||| |||| ||||||| ||| | |||||| |||| Sbjct 598959 TTAAGAGAGAGCATCTTGGTAAAGTGTGGAAATAGTTTAAGCTATTTATTCTAAA 598905 >seq2957 Length=4215098 Score = 91.5 bits (100), Expect = 3e-15 Identities = 175/252 (69%), Gaps = 7/252 (3%) Strand=Plus/Plus Query 1275 AATGCTTTCCTCAGGTTGTGATTGAATCGGATTTGTACATGTATTATGTCGTGGTTCGTG 1334 || |||||| | ||||||| ||||| | || || | | ||| |||| | | || || Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1335 TTGAAGGGTCTGCTGTGGTG--ATGCATTATCTTGAAATATAGGGGATTTGGTACCGTCC 1392 ||||| | ||| || ||||| ||| ||||||||||||| || |||||||||| | Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATG--TTATCTTGAAATAGCGGAGATTTGGTACTTCCT 1238866 Query 1393 AGATATACGCGCCATTCTCGGCTTGAGCTGCAGTGATGGGTTCC-CCTGTGCGTGAATCC 1451 || |||| | |||| | | ||||| ||| ||| || |||| | ||||| ||||| Sbjct 1238867 AGGTATATACTTCATTGTTGCACTGAGCCGCAATGA-GGTTTCCATCAGTGCGAAAATCC 1238925 Query 1452 ATCGTTGTGGCAGTTGATGGATATGTAATA-GCTGCAGCCGCAGTTGAGATCAATTCTCC 1510 || ||| |||| ||| | |||||| | |||| || || || |||||| | | | Sbjct 1238926 ATTGTTCATATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCACTACGCT 1238985 Query 1511 TCCTGCGAATTG 1522 | || | ||||| Sbjct 1238986 TTCTTCTAATTG 1238997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8742073170840