Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_008317.1 Length=2784 Score E Sequences producing significant alignments: (Bits) Value seq3069 118 2e-23 seq519 102 1e-18 seq1129 93.3 7e-16 seq1694 91.5 3e-15 seq2957 87.8 3e-14 >seq3069 Length=10854949 Score = 118 bits (130), Expect = 2e-23 Identities = 159/215 (74%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 1313 CTCAGGTTGTAGTTGAATTGTATCTGGATTGTAATCCTGTCTTGGTCTTTGTTGAATGGC 1372 || |||||| ||||||||||||||||||| || |||| ||||| ||||| ||||| Sbjct 3754411 CTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTAAATGGT 3754470 Query 1373 CTGCTGAGGTGATCTGTTATCTTGAAATATAGGGGATTTGGAACCGTCCAGATATACACG 1432 || || |||| ||||| ||||||||||||||||||||| || || ||||| ||| Sbjct 3754471 CTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATATATACG 3754530 Query 1433 CCACTCTGTGC-CTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATTGT--TTGC 1489 || | | ||| || ||| | ||||| || ||| ||||| ||| |||||| |||| Sbjct 3754531 TCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTTCTTGC 3754589 Query 1490 A--CAGTGTATTCCTATGTATACTGTGCAACCACA 1522 | | ||| || || ||| |||||||||||| Sbjct 3754590 AATTAATGTCTTGGTA-GTA---TGTGCAACCACA 3754620 >seq519 Length=3254320 Score = 102 bits (112), Expect = 1e-18 Identities = 161/225 (72%), Gaps = 7/225 (3%) Strand=Plus/Plus Query 1313 CTCAGGTTGTAGTTGAATTGTATCTGGATTGTAATCCTGTCTTGGTCTTTGTTGAATGGC 1372 || || ||||||||||| |||||||||||| || |||| |||| ||||| ||| | Sbjct 1741880 CTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAATTGT 1741939 Query 1373 CTGCTGAGGTGATCTGTTATCTTGAAATATAGGGGATTTGGAACCGTCCA--GATATACA 1430 || || ||| ||||||||||||||| |||| |||||| | ||| |||||||| Sbjct 1741940 CTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATATACA 1741999 Query 1431 CGCCACTCTGTGC-CTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATTGTTTGC 1489 ||| | | ||| |||||| ||||| ||||||| ||| | ||||||| ||| Sbjct 1742000 --CCATTGT-TGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTCCT 1742055 Query 1490 ACAGTGTATTCCTATGTATACTGTGCAACCACAGTCCAGATCAAT 1534 ||||| || | ||| | |||||||||||| | |||||| Sbjct 1742056 ACAGTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAAT 1742100 Score = 87.8 bits (96), Expect = 3e-14 Identities = 151/216 (70%), Gaps = 10/216 (5%) Strand=Plus/Plus Query 1662 ATTCTTCTCTTCATCAAGATATTCTATATAGGATGCCGTTGGTCCTGGATTGCAGAGGAA 1721 ||| | ||| | ||| || | ||| |||||||||| | | ||| ||| | | Sbjct 1742290 ATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCTCACTTAGATAGCACAATAC 1742349 Query 1722 GATTGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCATACTTGGTGTTGCTTTGCCA 1781 ||||| |||||| ||||||||||||| || |||||| | ||||| || |||||||| Sbjct 1742350 GATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCA 1742409 Query 1782 GTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT--TTAGAT-----AG--TGCGGG-T 1831 || |||| |||| || |||||||| | |||| || || || || ||| Sbjct 1742410 ATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAG 1742469 Query 1832 CTACGTCATCAATGACGTTATACCATGCGTCATTGC 1867 |||| ||||||||||| ||||| ||| ||||||| Sbjct 1742470 CTACATCATCAATGACATTATATGTTGCATCATTGC 1742505 Score = 77.0 bits (84), Expect = 6e-11 Identities = 236/361 (65%), Gaps = 12/361 (3%) Strand=Plus/Plus Query 2244 ACCTCCTCTAGCTGATCTTCCATCGACTTGGAAAACTCCATTATCAAGGATGTCTCCGTC 2303 || ||| ||||| ||||||||||| | ||| ||| | | ||| | | |||||| || Sbjct 1743138 ACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTC 1743197 Query 2304 TTTTTCCATATAGGTTTTGACGTCTGACGAGCTTTTAGCTCCCTGAATGTTCGGATGGAA 2363 ||||| || || | ||| || | || | ||||| |||| || ||||||| Sbjct 1743198 CTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAA 1743257 Query 2364 ATGTGCTGATCTGTTTGGG-GAGGTAAGGTCGAAGAATCTGTTGTTCTGGCATTTGAACT 2422 || | |||||| ||| || | | ||| || |||| | || ||| ||| | Sbjct 1743258 TTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATT 1743316 Query 2423 TTCCTTCGAATTGGATGAGAATATGCAAGTGAGGAGTCCCATCTTCGTGTAGTTCCCTGC 2482 | ||| ||| ||||| || | |||||| || || ||| | ||||||||| ||| Sbjct 1743317 TACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGC 1743376 Query 2483 AGATTCTTACGAATAGTTTATTAGTTGGTGTTGATAGGGCTAATATTTGTGA-----AAG 2537 | | ||||| |||| | ||| || || || | | |||| |||| || ||| Sbjct 1743377 ACACTCTTATGAATTTTAGATTTGTAGG-GTAGTTGAGGCT----TTTGAGATGATGAAG 1743431 Query 2538 TGCTTCCTCTTTGGTGAGTGAGCAATGTGGGTATGTAAGGAAATAGTTTCTGGCATTTAT 2597 || || ||||| ||||| || || |||| | || ||||||| ||| || |||||| Sbjct 1743432 AGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTAT 1743491 Query 2598 T 2598 | Sbjct 1743492 T 1743492 >seq1129 Length=1508174 Score = 93.3 bits (102), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 9/212 (4%) Strand=Plus/Minus Query 1662 ATTCTTCTCTTCATCAAGATATTCTATATAGGATGCCGTTGGTCCTGGATTGCAGAGGAA 1721 ||| | ||||| ||| || | ||| ||||| | || | |||||||| || | || Sbjct 679416 ATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAA 679357 Query 1722 GATTGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCATACTTGGTGTTGCTTTGCCA 1781 ||||| ||||| |||||||||| ||| ||||||||||||||| || |||||||| Sbjct 679356 GATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCA 679297 Query 1782 GTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGC-------TTTAGATAGTGCGGGTCTA 1834 | | ||| | |||| || || ||||| | ||| || || |||| | || || Sbjct 679296 AT-CTTTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGT-TA 679239 Query 1835 CGTCATCAATGACGTTATACCATGCGTCATTG 1866 | ||||| ||||| ||||| ||| |||||| Sbjct 679238 CATCATCTATGACATTATATGTTGCATCATTG 679207 Score = 77.0 bits (84), Expect = 6e-11 Identities = 120/169 (71%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 1318 GTTGTAGTTGAATTGTATCTGGATTGTAATCCTGTCTTGGTCTTTGTTGAATGGCCTGCT 1377 |||||||||||| ||||||||||| || ||| ||| |||||||| || || || Sbjct 693766 GTTGTAGTTGAACTGTATCTGGATCTCTATGATGTTGTGGATGTTGTTGAACGGTCTCCT 693707 Query 1378 GAGGTGATCTGTTATCTTGAAATATAGGGGATTTGGAACCGTCCAGATATACACGCCACT 1437 |||| | |||||||||| |||| ||||| || ||| ||| |||| |||||| | Sbjct 693706 CTGGTGTTGTGTTATCTTGTAATA-GGGGGAATTTAAACTTCCCAAGTATATACGCCATT 693648 Query 1438 CTGTGCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATTGTT 1486 | | || || ||| ||| || | ||| || || ||||||| ||| Sbjct 693647 ATTTCACTAAGTCGCAATGA-GATATTCCCGGTACGAAAATCCATCGTT 693600 >seq1694 Length=789422 Score = 91.5 bits (100), Expect = 3e-15 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 1319 TTGTAGTTGAATTGTATCTGGATTGTAATCCTGTCTTGGTCTTTGTTGAATGGCCTGCTG 1378 ||||||||||| ||||| ||||| || |||| |||| ||||||||||| | || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1379 AGGTGATCTGTTATCTTGAAATATAGGGGATTTGGAACCGTCCAGATATACACGCCACTC 1438 ||| ||||||||||||||| || ||||||| || ||| ||| |||||| | Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1439 TGTGC-CTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATTGTT 1486 | ||| | |||| |||||| ||||||| |||| ||||||| ||| Sbjct 596521 T-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTT 596474 Score = 87.8 bits (96), Expect = 3e-14 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 1662 ATTCTTCTCTTCATCAAGATATTCTATATAGGATGCCGTTGGTCCTGGATTGCAGAGGAA 1721 ||| | ||||||||| | | ||| ||||||| || | |||||||| || | | Sbjct 599834 ATTTTCCTCTTCATCCGGGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATAC 599775 Query 1722 GATTGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCATACTTGGTGTTGCTTTGCCA 1781 ||||| || ||| ||| ||||||||||| |||||||||||||| | |||||||| Sbjct 599774 GATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCA 599715 Query 1782 GTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTT 1817 || |||| |||| || |||||||| | ||||| Sbjct 599714 ATCTTTTTGCACCCCAATAAATTCTTTCTATTGCTT 599679 Score = 77.0 bits (84), Expect = 6e-11 Identities = 89/120 (74%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 1662 ATTCTTCTCTTCATCAAGATATTCTATATAGGATGCCGTTGGTCCTGGATTGCAGAGGAA 1721 ||| | ||||| ||| | | ||| | |||||||| | | | ||||||| | | Sbjct 596238 ATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATAC 596179 Query 1722 GATTGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCATACTTGGTGTTGCTTTGCCA 1781 ||||| |||||| ||||||||||||| || ||||||||||||||| || |||||||| Sbjct 596178 GATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATTACTTTGCCA 596119 >seq2957 Length=4215098 Score = 87.8 bits (96), Expect = 3e-14 Identities = 153/219 (70%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 1316 AGGTTGTAGTTGAATTGTATCTGGATTGTAATCCTGTCTTGGTCTTTGTTGAATGGCCTG 1375 ||||||| |||||| ||||||||||| || ||| | | |||||||||| || Sbjct 1238761 AGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTGTTGAATGATCTC 1238820 Query 1376 CTGAGGTGATCTGTTATCTTGAAATATAGGGGATTTGGAACCGTCCAGATATACACGCCA 1435 || |||| ||||||||||||||| || ||||||| || | || |||| || || Sbjct 1238821 CTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAGGTATATACTTCA 1238880 Query 1436 CTCTGTGC-CTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATTGTTTGCACAGT 1494 | | ||| |||||| ||| ||| | | | | ||||| ||||||||||| | ||| Sbjct 1238881 TTGT-TGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCATTGTTCATATAGT 1238939 Query 1495 GTAT-TCCTATGTATACTGTGCAACCACAGTCCAGATCA 1532 || | | | ||| ||||||||||| | |||||| Sbjct 1238940 TAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCA 1238978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8796471137130