Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_008329.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq3069 138 2e-29 seq2957 113 8e-22 seq1694 111 3e-21 seq519 107 3e-20 seq1129 80.6 5e-12 >seq3069 Length=10854949 Score = 138 bits (152), Expect = 2e-29 Identities = 181/248 (73%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 1300 CAACGCTTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTTATGATGTCGTGGTTGGT 1359 ||| |||||||| |||||| |||||||||||| |||||| |||||||||||||| | | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1360 GTTGAATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATCGTC-C 1418 ||| ||||||||| ||||| |||| |||||||||||||||| ||| | | || | Sbjct 3754461 GTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGA-TTTGGTACTTCTC 3754519 Query 1419 AGGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCA 1478 | |||| ||| || | | ||| | || | |||||| || ||| |||||||||| || Sbjct 3754520 AAATATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACA 3754579 Query 1479 TGATTTGCACAATCTATGCCGAAGTAGTATGAGCACCCGCACGTTAGATCAACTCTCCGT 1538 | || |||| ||| | |||||||| ||| || || || || ||| | | | Sbjct 3754580 TTGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACATTATATATAAACACGCTTT 3754639 Query 1539 CTCCGAAT 1546 |||| ||| Sbjct 3754640 CTCCTAAT 3754647 >seq2957 Length=4215098 Score = 113 bits (124), Expect = 8e-22 Identities = 166/231 (72%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 1301 AACGCTTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTTATGATGTCGTGGTTGGTG 1360 || |||||| | ||||||| |||||| ||||| ||||| |||||||| | | ||| || Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1361 TTGAATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATCGTCC-A 1419 ||||||| |||| ||||| |||||||||||||| || || ||| | | ||| | Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGA-TTTGGTACTTCCTA 1238867 Query 1420 GGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1479 |||||| || || | | ||| |||| ||| |||| | | | |||||||||||||| Sbjct 1238868 GGTATATACTTCATTGTTGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCAT 1238927 Query 1480 GATTTGCACAATCTATGCCGAAGTAGTAT-GAGCACCCGCACGTTAGATCA 1529 || | | | ||| ||||| ||| | ||| || ||| |||||||| Sbjct 1238928 TGTTCATATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCA 1238978 >seq1694 Length=789422 Score = 111 bits (122), Expect = 3e-21 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 1316 TTGTGGTTGAATTGTATTTGGATCGTTATGATGTCGTGGTTGGTGTTGAATGGTCTCTCG 1375 |||| |||||| |||||||||||| ||| |||||||||||| ||||||||||| || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1376 TGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATCGTCCAGGTATACACGCCACTC 1435 | ||| |||||||||||||| || ||||| | ||| | ||| |||||| | Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1436 TCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1479 | ||| ||| ||||||| |||||| |||| ||||||||| Sbjct 596521 TTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT 596478 Score = 100 bits (110), Expect = 5e-18 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1304 GCTTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTTATGATGTCGTGGTTGGTGTTG 1363 |||||||| | || || |||||| | ||| | |||| |||||||||| ||||| ||||| Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1364 AATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTT 1408 ||||||||| ||||| |||||||||||||| ||||||||| Sbjct 600172 AATGGTCTCCTCTGGTGTCATGTTATCTTGAAATAGAGGGGATTT 600128 >seq519 Length=3254320 Score = 107 bits (118), Expect = 3e-20 Identities = 129/174 (74%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 1306 TTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTTATGATGTCGTGGTTGGTGTTGAA 1365 |||||| || |||| |||||| ||||| ||||| |||||||||||||||| |||| || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1366 TGGTCTCTCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATCGTCCAGGTATA 1425 | ||||| |||| |||||||||||||| |||| |||| | ||| | ||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1426 CACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1479 || ||| | | ||| |||| |||||| |||||| ||| |||||||||| Sbjct 1741996 TACACCATTGTTGCACTGAG-CCTAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 Score = 96.9 bits (106), Expect = 6e-17 Identities = 234/352 (66%), Gaps = 2/352 (1%) Strand=Plus/Plus Query 2242 CCTCTTGCAGATCGTCCGTCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTC 2301 || || ||||||| ||| || || ||||| || | || || | | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2302 TCCAGGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGT 2361 || | ||| || || || | ||| | ||||||| |||| || ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2362 GCTGACCTGGTTGGG-GAGACCAGGTCGAAGAATCTGTTATTTTGGCATTTGTATTTGCC 2420 | ||| | ||| || | | ||| || |||| | ||| ||| | |||| || Sbjct 1743262 ATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2421 TTCGAATTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCATGAAGTTCGCTGCAGat 2480 | ||| |||||||| || || | ||| || ||| | || ||||| |||| | Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2481 tttgatgtattttttatttgttggggtgtttaggttttttatttgGGAAAGTGCCTCTTC 2540 | | ||| ||||| |||||| ||| ||| ||| |||| | || ||| || || || Sbjct 1743381 TCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCATC 1743440 Query 2541 TTTAGTAAGAGAGCATTGTGGATAAGTGAGGAAAAAGTTTTTGGCATATATT 2592 ||| || || || ||| ||| ||||||||||| |||||| || |||| Sbjct 1743441 TTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATT 1743492 >seq1129 Length=1508174 Score = 80.6 bits (88), Expect = 5e-12 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1306 TTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTTATGATGTCGTGGTTGGTGTTGAA 1365 |||| | | ||||| |||||| |||||||||||| |||||||||||| ||| ||||||| Sbjct 679757 TTTCATAAAGTTGTAGTTGAACTGTATTTGGATCTCTATGATGTCGTGATTGTTGTTGAA 679698 Query 1366 TGGTCTC 1372 ||||||| Sbjct 679697 TGGTCTC 679691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8697284135784