Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_008373.1 Length=2744 Score E Sequences producing significant alignments: (Bits) Value seq519 132 8e-28 seq3069 95.1 2e-16 seq1694 91.5 3e-15 seq1129 86.0 1e-13 seq2957 78.8 2e-11 >seq519 Length=3254320 Score = 132 bits (146), Expect = 8e-28 Identities = 235/343 (69%), Gaps = 0/343 (0%) Strand=Plus/Plus Query 2228 TCCCCTAGCACTTCGTCCGTCGACCTGGAATTGACCCCATTCAATGATGTCTCCATCCTT 2287 |||||||||| || ||| || | || || | | | || || | | |||||| ||||| Sbjct 1743141 TCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTT 1743200 Query 2288 ATGGATGTAGGACTTGACATCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATG 2347 | |||||| || || |||| ||| | ||||||| |||| || ||||||| || Sbjct 1743201 TTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTG 1743260 Query 2348 TGTTGATCTGGTTGGGGAAACCAGGTCGAAGAATCTGTTATTCGTGCAGTTGTATTTGCC 2407 | | |||| | ||| | | ||| || |||| | ||| ||||| | |||| || Sbjct 1743261 AATGGTTCTGTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2408 TTCGAATTGCATAAGCACGTGGAGATGAGGGTTCCCATTCTTGTGTAATTCTCTGCAAAT 2467 | ||| || ||||| || || | ||| || | ||| || |||||| |||| |||| | Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2468 TTTTATGAATTTTATATTGGTAGGGGTTTGCAGGTTTTGTAACTGGGAAAGTGCTTCCTC 2527 | |||||||||||| ||| |||||| | ||| ||| | || ||| || || || Sbjct 1743381 TCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCATC 1743440 Query 2528 TTTGGTGAGAGAGCACTGTGGGTATGTTAAGAAATAATTTTTG 2570 ||| ||||| || || |||| | || | ||||| ||||||| Sbjct 1743441 TTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTG 1743483 Score = 100 bits (110), Expect = 5e-18 Identities = 232/345 (67%), Gaps = 5/345 (1%) Strand=Plus/Plus Query 2228 TCCCCTAGCACTTCGTCCGTCGACCTGGAATTGACCCCATTCAATGATGTCTCCATCCTT 2287 ||||||| || || ||| || | || || | | |||| || | |||||| ||||| Sbjct 1748956 TCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTT 1749015 Query 2288 ATGGATGTAGGACTTGAC--ATCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAA 2345 | ||||| || || || ||| || | |||||||| |||| || |||||||| Sbjct 1749016 TTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAAT 1749075 Query 2346 TGTGTTGATCTGGTTGGGGAAACCAGGTCGAAGAATCTGTTATTCGTGCAGTTGTATTTG 2405 || | | ||| || ||| | |||||| || | | ||| |||||| | |||| Sbjct 1749076 TGAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTC 1749134 Query 2406 CCTTCGAATTGCATAAGCACGTGGAGATGAGGGTTCCCATTCTTGTGTAATTCTCTGCAA 2465 ||| ||| | | | || || | ||| || ||||| || |||||| ||||||||| Sbjct 1749135 CCTGTGAACTAGAGATT-ACATGCAAATGTGG-TTCCCGTTGCTGTGTAGTTCTCTGCAC 1749192 Query 2466 ATTTTTATGAATTTTATATTGGTAGGGGTTTGCAGGTTTTGTAACTGGGAAAGTGCTTCC 2525 | |||||||||||| | ||| |||||| | ||||||| | || ||| | || Sbjct 1749193 ACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGAACATCA 1749252 Query 2526 TCTTTGGTGAGAGAGCACTGTGGGTATGTTAAGAAATAATTTTTG 2570 ||||| ||||| | || |||| | || | |||||||||||| Sbjct 1749253 TCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTG 1749297 Score = 91.5 bits (100), Expect = 3e-15 Identities = 132/177 (75%), Gaps = 7/177 (4%) Strand=Plus/Plus Query 1293 TTTCCTCAGGTTGTAATTGAATTGGATTTGGACGGTTATGATGTCGTGGTTCCTCCGGAA 1352 |||||| || ||||| ||||| || || |||| ||||||||||||||| | || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1353 TGGTCT-CTCTAGGTGTTGGGGTATCTTGAAATATAGGGGA-TTGTTGATTGTCCAGGTA 1410 | |||| |||| ||| | | | |||||||||||| |||| | ||| | ||| ||| | | Sbjct 1741936 TTGTCTCCTCT-GGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATT-CCCAAGGA 1741993 Query 1411 TATACGCCATTCTCTGC-TTGAGCCGCAGTGATGAGTTCCCCTGTGCGTAAATCCAT 1466 ||||| ||||| | ||| |||||| ||||| ||||||| ||| | |||||||| Sbjct 1741994 TATACACCATTGT-TGCACTGAGCC-TAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 >seq3069 Length=10854949 Score = 95.1 bits (104), Expect = 2e-16 Identities = 133/179 (74%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 1291 GCTTTCCTCAGGTTGTAATTGAATTGGATTTGGACGGTTATGATGTCGTGGTTCCTCCGG 1350 |||||||| |||||| | |||||||| || |||| |||||||||||||| | Sbjct 3754405 GCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTA 3754464 Query 1351 AATGGTCT-CTCTAGGTGTTGGGGTATCTTGAAATATAGGGGA-TTGTTGATTGTCCAGG 1408 |||||||| |||| ||||| | || |||||||||||||||| ||| | || | || Sbjct 3754465 AATGGTCTCCTCT-GGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCT-CAAA 3754522 Query 1409 TATATACGCCATTCTCTGC-TTGAGCCGCAGTGATGAGTTCCCCTGTGCGTAAATCCAT 1466 |||||||| |||| | ||| | ||||| ||||| || ||| ||||| |||| ||| Sbjct 3754523 TATATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACAT 3754580 >seq1694 Length=789422 Score = 91.5 bits (100), Expect = 3e-15 Identities = 123/166 (74%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 1303 TTGTAATTGAATTGGATTTGGACGGTTATGATGTCGTGGTTCCTCCGGAATGGTCTC-TC 1361 ||||| ||||| || ||||||| ||| ||||||||||| | ||||||| || || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1362 TAGGTGTTGGGGTATCTTGAAATATAGGGGATTGTTGATTGTCCAGGTATATACGCCATT 1421 ||| ||| | | |||||||||||| || |||| | | ||| | |||||||||||| Sbjct 596581 TAG-TGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATT 596523 Query 1422 CTCTGC-TTGAGCCGCAGTGATGAGTTCCCCTGTGCGTAAATCCAT 1466 | ||| ||||| |||||| ||||||| |||| |||||||| Sbjct 596522 GT-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT 596478 >seq1129 Length=1508174 Score = 86.0 bits (94), Expect = 1e-13 Identities = 127/175 (73%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 1293 TTTCCTCAGGTTGTAATTGAATTGGATTTGGACGGTTATGATGTCGTGGTTCCTCCGGAA 1352 |||||| | |||||| ||||| || || |||| |||||||| |||| | | ||| Sbjct 693775 TTTCCTAAAGTTGTAGTTGAACTGTATCTGGATCTCTATGATGTTGTGGATGTTGTTGAA 693716 Query 1353 TGGTCTC-TCTAGGTGTTGGGGTATCTTGAAATATAGGGGATTGTTGATTGTCCAGGTAT 1411 |||||| ||| ||||||| | ||||||| |||| ||| ||| | | | ||| |||| Sbjct 693715 CGGTCTCCTCT-GGTGTTGTGTTATCTTGTAATAGGGGGAATT-TAAACTTCCCAAGTAT 693658 Query 1412 ATACGCCATTCTCTGCTTGAGCCGCAGTGATGAGTTCCCCTGTGCGTAAATCCAT 1466 |||||||||| | | | || |||| ||| || | ||| || || |||||||| Sbjct 693657 ATACGCCATTATTTCACTAAGTCGCAATGA-GATATTCCCGGTACGAAAATCCAT 693604 >seq2957 Length=4215098 Score = 78.8 bits (86), Expect = 2e-11 Identities = 125/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 1291 GCTTTCCTCAGGTTGTAATTGAATTGGATTTGGACGGTTATGATGTCGTGGTTCCTCCGG 1350 |||||| | ||||||| ||||| || || |||| | |||||||| | | || | | Sbjct 1238752 GCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTGTTG 1238811 Query 1351 AATGGTCTCTCTAGGTGTTGGGGTATCTTGAAATATAGGGGATTGTTGATTGTCCAGGTA 1410 |||| |||| | ||||| | |||||||||||| || |||| | | | ||||| Sbjct 1238812 AATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAGGTA 1238871 Query 1411 TATACGCCATTCTCTGC-TTGAGCCGCAGTGATGAGTTCCCCTGTGCGTAAATCCAT 1466 ||||| |||| | ||| ||||||||| ||| | | | | ||||| |||||||| Sbjct 1238872 TATACTTCATTGT-TGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCAT 1238927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8671685065480