Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_008374.1 Length=2744 Score E Sequences producing significant alignments: (Bits) Value seq1129 98.7 2e-17 seq1694 96.9 6e-17 seq519 96.9 6e-17 seq3069 93.3 7e-16 seq2957 84.2 4e-13 >seq1129 Length=1508174 Score = 98.7 bits (108), Expect = 2e-17 Identities = 130/175 (74%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 1293 TTTCCTCAGGTTGTAATTGAATTGTATTTGGACGGTTATGATATCGTGGTTCCTCAGGAA 1352 |||||| | |||||| ||||| ||||| |||| |||||| | |||| | | ||| Sbjct 693775 TTTCCTAAAGTTGTAGTTGAACTGTATCTGGATCTCTATGATGTTGTGGATGTTGTTGAA 693716 Query 1353 TGGTCTC-TCTAGGTGTTGGGTTATCTTGAAATAGAGGGGATTGTTGATTGTCCAGGTAT 1411 |||||| ||| ||||||| ||||||||| ||||| ||| ||| | | | ||| |||| Sbjct 693715 CGGTCTCCTCT-GGTGTTGTGTTATCTTGTAATAGGGGGAATT-TAAACTTCCCAAGTAT 693658 Query 1412 ATACGCCATTCTCTGCTTGAGTTGCAGTGATGAGTTCCCCTGTGCGAAAATCCAT 1466 |||||||||| | | | ||| ||| ||| || | ||| || ||||||||||| Sbjct 693657 ATACGCCATTATTTCACTAAGTCGCAATGA-GATATTCCCGGTACGAAAATCCAT 693604 >seq1694 Length=789422 Score = 96.9 bits (106), Expect = 6e-17 Identities = 124/166 (75%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 1303 TTGTAATTGAATTGTATTTGGACGGTTATGATATCGTGGTTCCTCAGGAATGGTCTC-TC 1361 ||||| ||||| |||||||||| ||| || |||||||| | ||||||| || || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1362 TAGGTGTTGGGTTATCTTGAAATAGAGGGGATTGTTGATTGTCCAGGTATATACGCCATT 1421 ||| ||| | ||||||||||||||||| |||| | | ||| | |||||||||||| Sbjct 596581 TAG-TGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATT 596523 Query 1422 CTCTGC-TTGAGTTGCAGTGATGAGTTCCCCTGTGCGAAAATCCAT 1466 | ||| ||| |||||| ||||||| |||| ||||||||| Sbjct 596522 GT-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT 596478 Score = 82.4 bits (90), Expect = 1e-12 Identities = 101/133 (76%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 1291 GCTTTCCTCAGGTTGTAATTGAATTGTATTTGGACGGTTATGATATCGTGGTTCCTCAGG 1350 |||||||| | || ||| ||||| | ||| | || |||||| ||| |||| | | Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1351 AATGGTCTC-TCTAGGTGTTGGGTTATCTTGAAATAGAGGGGA-TTGTTGATTGTCCAGG 1408 ||||||||| ||| ||||| ||||||||||||||||||||| ||| | || | || | Sbjct 600172 AATGGTCTCCTCT-GGTGTCATGTTATCTTGAAATAGAGGGGATTTGGTACTTCT-CAAG 600115 Query 1409 TATATACGCCATT 1421 |||||||| |||| Sbjct 600114 TATATACGTCATT 600102 >seq519 Length=3254320 Score = 96.9 bits (106), Expect = 6e-17 Identities = 133/177 (75%), Gaps = 7/177 (4%) Strand=Plus/Plus Query 1293 TTTCCTCAGGTTGTAATTGAATTGTATTTGGACGGTTATGATATCGTGGTTCCTCAGGAA 1352 |||||| || ||||| ||||| ||||| |||| |||||| |||||||| | || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1353 TGGTCTC-TCTAGGTGTTGGGTTATCTTGAAATAGAGGGGA-TTGTTGATTGTCCAGGTA 1410 | ||||| ||| ||| | | ||||||||||||||||||| | ||| | ||| ||| | | Sbjct 1741936 TTGTCTCCTCT-GGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATT-CCCAAGGA 1741993 Query 1411 TATACGCCATTCTCTGC-TTGAGTTGCAGTGATGAGTTCCCCTGTGCGAAAATCCAT 1466 ||||| ||||| | ||| |||| ||||| ||||||| ||| |||||||||| Sbjct 1741994 TATACACCATTGT-TGCACTGAG-CCTAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 Score = 84.2 bits (92), Expect = 4e-13 Identities = 173/256 (68%), Gaps = 10/256 (4%) Strand=Plus/Plus Query 1611 GCATTTTTTAATGCCCAGTTTTTGAGTGCTGCGTTCTTTTCTTCGTCCAAGTATTCTTTA 1670 ||||||| || ||| || ||||| ||| | || | || | || | | | |||||| Sbjct 1742258 GCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTA 1742317 Query 1671 TATGATGATGTTGGTCCTGGATTGCAAAGGAAGATTGACGGGATACCGCCTTTAATTTGA 1730 || |||| | | ||| ||| | | |||||| ||||| || |||||||||| | Sbjct 1742318 TAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAA 1742377 Query 1731 ATTGGCTTTCCATACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTA 1790 | | || | | |||| || |||||||| || |||| |||| || |||||||| Sbjct 1742378 ACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTC 1742437 Query 1791 AAATGCTT--TAGAT-----AGTG---GGGATCTACGTCATCAATGACGTTATACCAAGC 1840 |||||| || || ||| |||| |||| ||||||||||| ||||| || Sbjct 1742438 CAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATATGTTGC 1742497 Query 1841 ATCATTGCTGTATACT 1856 |||||||| | ||||| Sbjct 1742498 ATCATTGCAGAATACT 1742513 Score = 78.8 bits (86), Expect = 2e-11 Identities = 330/509 (65%), Gaps = 18/509 (4%) Strand=Plus/Plus Query 2085 AAAATCCTATCCAAATTATTAGTTAAATTATGAAATTGTAAAACAAAA-TCTTTGGGAGC 2143 ||||| | | ||||||| | | ||||||||| |||||| | ||| |||||||| | Sbjct 1742998 AAAATTCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAACTCTTTGGGT-C 1743056 Query 2144 TTTCTCCCTTAATATATTGAGGGCCGCAGCTTTGGACCCTGAATTGATTGCCTCGGCATA 2203 ||||| ||| ||| | | | | | || | |||| ||||| || || | | || Sbjct 1743057 ATTCTCTTTTATTATTTGTAATGTTGAATCTCTTGACCTAGAATTAATCGCTTTAGTGTA 1743116 Query 2204 TGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCCGATCTTCCATCGATCTGGAAAACTCC 2263 | | || | ||| || ||| ||||| ||||||||||| || || ||| | | Sbjct 1743117 TACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATC 1743176 Query 2264 ATGATCAAGCACGTCTCTGTCTTTTTCCATGTAGGACTTAACAT---CTGTTGAGCTCTT 2320 ||| | ||||| || ||||| ||||| || ||||||| ||||| || Sbjct 1743177 TCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGA---TTT 1743233 Query 2321 AGCGCTCTGAATGTTCGGATGGAAATGTGTTGACCTGGTTGGG-GATATGAGATCGAAGA 2379 || |||| || ||||||| || | | ||| | ||| ||||| | || || | Sbjct 1743234 AGAAAATTGAACATTTTGATGGAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAA 1743292 Query 2380 ATCTGTTGTTTTG-GCATTTGAACTTTCCTTCGAATTGGATGAGGATATGCAGGTGAGGA 2438 ||| ||| || | ||| ||| || ||| ||| ||||| || | ||||| || || Sbjct 1743293 ATC-ATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGT 1743351 Query 2439 GTCCCATCTTCGTGTAGTTCCCTGCAGATTCGAATGAATAATTTATTGGTTGGG--GTTG 2496 ||| | ||||||||| |||| | || |||||| | ||| || ||| |||| Sbjct 1743352 TCCCCGTTGCTGTGTAGTTCTTTGCACACTCTTATGAATTTTAGATTTGTAGGGTAGTTG 1743411 Query 2497 ATAGGGCTAAT-AATTGGGAAAGTGCTTCTTCTTTGCTAAGCGAGCAGTGTGGGTATGTG 2555 | |||| | | || ||| || || ||||| | || || || |||| | ||| Sbjct 1743412 A---GGCTTTTGAGATGATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTG 1743468 Query 2556 AGGAAATAGTTCTTGGCATTTATTATAAA 2584 ||||||| || ||| ||||||| |||| Sbjct 1743469 AGGAAATGATTTTTGCTATTTATTCTAAA 1743497 >seq3069 Length=10854949 Score = 93.3 bits (102), Expect = 7e-16 Identities = 135/183 (74%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 1287 CAACGCTTTCCTCAGGTTGTAATTGAATTGTATTTGGACGGTTATGATATCGTGGTTCCT 1346 ||| |||||||| |||||| | ||||||||||| |||| |||||| ||||||| | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1347 CAGGAATGGTCT-CTCTAGGTGTTGGGTTATCTTGAAATAGAGGGGA-TTGTTGATTGTC 1404 |||||||| |||| ||||| |||| ||||||||| |||||| ||| | || | Sbjct 3754461 GTTAAATGGTCTCCTCT-GGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCT- 3754518 Query 1405 CAGGTATATACGCCATTCTCTGC-TTGAGTTGCAGTGATGAGTTCCCCTGTGCGAAAATC 1463 || |||||||| |||| | ||| | || | ||||| || ||| |||||||||| Sbjct 3754519 CAAATATATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATA 3754577 Query 1464 CAT 1466 ||| Sbjct 3754578 CAT 3754580 >seq2957 Length=4215098 Score = 84.2 bits (92), Expect = 4e-13 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 1288 AACGCTTTCCTCAGGTTGTAATTGAATTGTATTTGGACGGTTATGATATCGTGGTTCCTC 1347 || |||||| | ||||||| ||||| ||||| |||| | |||||| | | | || | Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1348 AGGAATGGTCTCTCTAGGTGTTGGGTTATCTTGAAATAGAGGGGATTGTTGATTGTCCAG 1407 ||||| |||| | ||||| ||||||||||||||| || |||| | | | || Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAG 1238868 Query 1408 GTATATACGCCATTCTCTGC-TTGAGTTGCAGTGATGAGTTCCCCTGTGCGAAAATCCAT 1466 |||||||| |||| | ||| |||| ||| ||| | | | | |||||||||||||| Sbjct 1238869 GTATATACTTCATTGT-TGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCAT 1238927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8671685065480