Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_008377.1 Length=2792 Score E Sequences producing significant alignments: (Bits) Value seq519 111 3e-21 seq3069 86.0 1e-13 seq1694 80.6 5e-12 >seq519 Length=3254320 Score = 111 bits (122), Expect = 3e-21 Identities = 241/358 (67%), Gaps = 2/358 (1%) Strand=Plus/Plus Query 2262 TCCCCTAGCACTTCTTCCGTCGACCTGGAACTCTCCCCATTCCAGGGTGTCGCCGTCCTT 2321 |||||||||| |||||| || | || || || | || || | | ||| || ||||| Sbjct 1743141 TCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTT 1743200 Query 2322 GTCGATGTAGGACTTGACGTCCGAGCTAGACTTAGCTCCCTGAATGTTCGGATGGAAATG 2381 |||||||| || || || | ||| | || |||| |||| || ||||||| || Sbjct 1743201 TTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTG 1743260 Query 2382 TGTTGACCTACTTGGG-GAGACCAGGTCGAAGAATCTCTGATTTGTGCAGTTGTATTTGC 2440 | | || | ||| || | | ||| || |||| ||||| ||||| | |||| | Sbjct 1743261 AATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTAC 1743319 Query 2441 CCTCGAACTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCATGTAACTCACGGCAGA 2500 | ||| |||||||| ||||| | |||||||||||| || |||| || ||| | Sbjct 1743320 CTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACA 1743379 Query 2501 TTTTAATATATTTTTTATTTGTAGGGGTTTGTAAATCTTTGAGTTGCCCTAATGCGTCTT 2560 | | || ||||| |||||||||| | | |||||| || | || || | Sbjct 1743380 CTCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCAT 1743439 Query 2561 CTTTAGACAGAGAGCATTTTGGGAAAGTGAGAAAATAATTTTTGGCCTTAATGCTAAA 2618 |||| | || || ||| ||||||||||||| |||| ||||||| || || ||||| Sbjct 1743440 CTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATTCTAAA 1743497 Score = 102 bits (112), Expect = 1e-18 Identities = 241/359 (67%), Gaps = 5/359 (1%) Strand=Plus/Plus Query 2262 TCCCCTAGCACTTCTTCCGTCGACCTGGAACTCTCCCCATTCCAGGGTGTCGCCGTCCTT 2321 ||||||| || |||||| || | || || || |||| || | ||| || ||||| Sbjct 1748956 TCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTT 1749015 Query 2322 GTCGATGTAGGACTTGACG--TCCGAGCTAGACTTAGCTCCCTGAATGTTCGGATGGAAA 2379 || ||||| || || || || || | || ||||| |||| || |||||||| Sbjct 1749016 TTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAAT 1749075 Query 2380 TGTGTTGACCTACTTGGGGAGACCAGGTCGAAGAATCTCTGATTTGTGCAGTTGTATTTG 2439 || | | ||| || ||| | |||||| || | ||||| |||||| | |||| Sbjct 1749076 TGAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTC 1749134 Query 2440 CCCTCGAACTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCATGTAACTCACGGCAG 2499 || ||||| || | ||||| | ||||||||||| | || |||| || | ||| Sbjct 1749135 CCTGTGAACTAGAGATT-ACATGCAAATGTGGTTCCCGTTGCTG-TGTAGTTCTCTGCAC 1749192 Query 2500 ATTTTAATATATTTTTTATTTGTAGGGGTTTGTAAATCTTTGAGTTGCCCTAATGCGTCT 2559 | ||| || |||| |||||||||| | | | |||||| || | | | || Sbjct 1749193 ACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGAACATCA 1749252 Query 2560 TCTTTAGACAGAGAGCATTTTGGGAAAGTGAGAAAATAATTTTTGGCCTTAATGCTAAA 2618 ||||| | || | ||| |||||||||||||||||||||||||| || || ||||| Sbjct 1749253 TCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATTCTAAA 1749311 Score = 78.8 bits (86), Expect = 2e-11 Identities = 106/144 (74%), Gaps = 3/144 (2%) Strand=Plus/Plus Query 1398 GGTGTCTTGTGATCTTGAAATATAGGGGATTTGGTGTCTCCCAGATAAAAACGCCATTCG 1457 ||| || ||| ||||||||||| |||| ||||||| ||||| | | || ||||| | Sbjct 1741947 GGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATATACACCATT-G 1742005 Query 1458 TTG-TCTGACGAGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGGTTGGCGCAGTTTAT 1516 ||| |||| | ||||| ||||||| ||| || ||||||| ||| ||||| || Sbjct 1742006 TTGCACTGA-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTCCTACAGTTAAT 1742064 Query 1517 GTGTAGGTAGTATGAGCATCCACA 1540 |||| |||| ||| ||| ||||| Sbjct 1742065 GTGTTGGTAATATATGCAACCACA 1742088 >seq3069 Length=10854949 Score = 86.0 bits (94), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 1398 GGTGTCTTGTGATCTTGAAATATAGGGGATTTGGTGTCTCCCAGATAAAAACGCCATTCG 1457 |||||| ||| | |||||||||||||||||||||| || || ||| | ||| |||| | Sbjct 3754478 GGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATATATACGTCATT-G 3754536 Query 1458 TTG-TCTGACGAGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGGTTGGCGCAGTTTAT 1516 ||| || | | ||||| || ||| |||||| ||| ||| ||| ||| || || Sbjct 3754537 TTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTTCTTGCAATTAAT 3754596 Query 1517 GTGTAGGTAGTATGAGCATCCACA 1540 || | ||||||||| ||| ||||| Sbjct 3754597 GTCTTGGTAGTATGTGCAACCACA 3754620 >seq1694 Length=789422 Score = 80.6 bits (88), Expect = 5e-12 Identities = 147/208 (71%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 1337 TTGTGGTTGAACCGGATTTGGACATCTATTATATGAAACGGCCG--GTTGAACGGGTGTA 1394 |||| ||||||| | ||||||| ||||| || | || | |||||| || ||| Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGT--GGTTGTTGTTGAATGG-TGTC 596585 Query 1395 TTAG-GTGTCTTGTGATCTTGAAATATAGGGGATTTGGTGTCTCCCAGATAAAAACGCCA 1453 | ||||| ||| ||||||||||| || |||||||| ||||| | | |||||| Sbjct 596584 CTCTAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCA 596525 Query 1454 TTCGTTG-TCTGACGAGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGGTTGGCGCAGT 1512 || |||| | || |||||| ||||||| |||| | ||||||| ||| ||| | Sbjct 596524 TT-GTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAAT 596466 Query 1513 TTATGTGTAGGTAGTATGAGCATCCACA 1540 | || ||| |||| |||| ||| ||||| Sbjct 596465 TAATATGTTGGTAATATGTGCAACCACA 596438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8822070180090