Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_008492.1 Length=2606 Score E Sequences producing significant alignments: (Bits) Value seq1694 141 2e-30 seq1129 136 7e-29 seq519 136 7e-29 >seq1694 Length=789422 Score = 141 bits (156), Expect = 2e-30 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 1474 GCATTCTTGAGAGTCCAGTTCCTGAGAGCTGAGTTTTCCTCTTTGTCCAGGAAATCTTTA 1533 ||||| | ||| ||||| ||| |||| || |||||||||| ||| ||||||||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1534 TAGCTGGCACCCTCACCTGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGA 1593 ||| ||||| ||||||||||| || | |||||||||| ||| | | |||||||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1594 ACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTC 1653 || | || || || ||||||| ||||| || || || |||| | || ||||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1654 CAGTGCTTTAGCTTT-AGATAGTGCGGTGCGACGTCATCAATGACGTTAT 1702 | ||||| | |||| || |||| || || | ||||||||| | |||| Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTG-GGAGCTGCATCATCAATGTCATTAT 599638 Score = 105 bits (116), Expect = 1e-19 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 1474 GCATTCTTGAGAGTCCAGTTCCTGAGAGCTGAGTTTTCCTCTTTGTCCAGGAAATCTTTA 1533 |||| | ||| | ||| ||| | || || ||||||||||| |||| ||||||| | Sbjct 596270 GCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAAATCTCTG 596211 Query 1534 TAGCTGGCACCCTCACCTGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGA 1593 ||| ||||| |||| | ||||||| | |||||||||||||| || |||||||||| | Sbjct 596210 TAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTTAATTTTA 596151 Query 1594 ACTGGCTTGCCGTATTTGCAATT 1616 || || || || || |||||||| Sbjct 596150 ACGGGTTTCCCATACTTGCAATT 596128 >seq1129 Length=1508174 Score = 136 bits (150), Expect = 7e-29 Identities = 171/231 (74%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 1474 GCATTCTTGAGAGTCCAGTTCCTGAGAGCTGAGTTTTCCTCTTTGTCCAGGAAATCTTTA 1533 ||||| | ||| ||| | ||| |||| || ||||||||||| || |||||||||||| Sbjct 679448 GCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTA 679389 Query 1534 TAGCTGGCACCCTCACCTGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGA 1593 |||| ||||| ||||||||||| || | | ||||||||||| ||||||||| || Sbjct 679388 TAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGA 679329 Query 1594 ACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTC 1653 || || || || || |||||||| ||||| | ||| | | |||| | | |||||| Sbjct 679328 ACGGGTTTCCCATACTTGCAATTACTTTGCCAAT-CTTTTTGCCCCCAATCAAATCTTTC 679270 Query 1654 CAGTGCTTTAGCTTT-AGATAGTGCGGTGCGACGTCATCAATGACGTTATA 1703 | ||||| | |||| || |||| || | || ||||| ||||| ||||| Sbjct 679269 TAATGCTTCATCTTTAAGTAAGTG-GGAGTTACATCATCTATGACATTATA 679220 >seq519 Length=3254320 Score = 136 bits (150), Expect = 7e-29 Identities = 173/235 (74%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 1474 GCATTCTTGAGAGTCCAGTTCCTGAGAGCTGAGTTTTCCTCTTTGTCCAGGAAATCTTTA 1533 ||||| | || |||| ||| |||||||| |||||||| || || |||||||||||| Sbjct 1742258 GCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTA 1742317 Query 1534 TAGCTGGCACCCTCACCTGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGA 1593 ||| |||||||||| | ||| ||| | |||||||||||||| || |||||||||| | Sbjct 1742318 TAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAA 1742377 Query 1594 ACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTC 1653 || | || | | |||||||| ||||| || || || |||| | | ||||||| Sbjct 1742378 ACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTC 1742437 Query 1654 CAGTG----CTTTAGCTTTAGATA-GTGCGGTGCGACGTCATCAATGACGTTATA 1703 || || || | ||||| || ||| || || || ||||||||||| ||||| Sbjct 1742438 CAATGCTACCTACATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTATA 1742491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8230101102736