Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_008494.1 Length=2569 Score E Sequences producing significant alignments: (Bits) Value seq1129 134 2e-28 seq519 123 4e-25 seq1694 113 7e-22 >seq1129 Length=1508174 Score = 134 bits (148), Expect = 2e-28 Identities = 260/382 (68%), Gaps = 4/382 (1%) Strand=Plus/Minus Query 1434 GCATTCTTCAGAGTCCAGTTCCTGAGTGATGCGTTTTCAGCTTTGTCGAGGAAATCTTTA 1493 ||||| | || ||| | ||| |||| | | ||||| |||| || |||||||||||| Sbjct 679448 GCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTA 679389 Query 1494 TAGCTGGCACCCTCACCCGGATTGCAAAGCACGATTGAGGGGATCCCTCCTTTAATTTGA 1553 |||| ||||| ||||| ||||| || | | |||||| |||| ||||||||| || Sbjct 679388 TAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGA 679329 Query 1554 ACTGGCTTTCCGTATTTGCAATTTGACTGCCAGTTCTTTTGGGCCCCTATGAGTTCTTTC 1613 || || || || || |||||||| ||||| |||||| | |||| || | |||||| Sbjct 679328 ACGGGTTTCCCATACTTGCAATTACTTTGCCA-ATCTTTTTGCCCCCAATCAAATCTTTC 679270 Query 1614 CAGTGCTTTAACTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCA 1673 | ||||| | ||||| || || | || ||||| ||||| ||||| | ||| Sbjct 679269 TAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATATGTTGCATCA 679210 Query 1674 TTCGAGTAGACCCTGTTATTGAAGTCCAA---ATGTCCACTGAGATAATTATGTGGGCCT 1730 || | | || || ||||| || || ||| || | | |||||||| || | Sbjct 679209 TTGTGGAATACTGATTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATGACGGTCG 679150 Query 1731 AAAGAACGAGCCCACATTGTTTTGCCTGTCCTTGATTCACCTTCCACTATTATACTAATA 1790 | || || ||| | | ||||||||| | | | ||||| | |||||||| || Sbjct 679149 AGTGAGCGGGCCAAAGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATTATACTTTTA 679090 Query 1791 GGTCTCTCCGGCCGCGCAGCGG 1812 ||||| || |||| |||| ||| Sbjct 679089 GGTCTATCTGGCCACGCATCGG 679068 >seq519 Length=3254320 Score = 123 bits (136), Expect = 4e-25 Identities = 170/235 (72%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 1434 GCATTCTTCAGAGTCCAGTTCCTGAGTGATGCGTTTTCAGCTTTGTCGAGGAAATCTTTA 1493 ||||| | || |||| ||| |||| | | | ||||| | || || |||||||||||| Sbjct 1742258 GCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTA 1742317 Query 1494 TAGCTGGCACCCTCACCCGGATTGCAAAGCACGATTGAGGGGATCCCTCCTTTAATTTGA 1553 ||| |||||||||| ||| ||| | |||||||| ||||| || |||||||||| | Sbjct 1742318 TAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAA 1742377 Query 1554 ACTGGCTTTCCG-TATTTGCAATTTGACTGCCAGTTCTTTTGGGCCCCTATGAGTTCTTT 1612 || | |||||| | |||||||| ||||| | ||||| |||| || | |||||| Sbjct 1742378 AC-GAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTT 1742436 Query 1613 CCAGTG----CTTTAACTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATA 1663 ||| || || | ||||| ||| || || || ||||||||||| ||||| Sbjct 1742437 CCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATA 1742491 >seq1694 Length=789422 Score = 113 bits (124), Expect = 7e-22 Identities = 199/290 (69%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 1434 GCATTCTTCAGAGTCCAGTTCCTGAGTGATGCGTTTTCAGCTTTGTCGAGGAAATCTTTA 1493 ||||| | || ||||| ||| |||| | | ||||| ||| || ||||||||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1494 TAGCTGGCACCCTCACCCGGATTGCAAAGCACGATTGAGGGGATCCCTCCTTTAATTTGA 1553 ||| ||||| ||||| ||||| || | |||||||| | ||| | | |||||||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1554 ACTGGCTTTCCGTATTTGCAATTTGACTGCCAGTTCTTTTGGGCCCCTATGAGTTCTTTC 1613 || | || || || ||||||| ||||| | ||||| |||| || | ||||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1614 CAGTGCTTTAACTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCA 1673 | ||||| | ||||| || || || | ||||||||| | |||| | ||| Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTATCTGGTGCATCA 599627 Query 1674 TTCGAGTAGACCCTGTTATTGAAGTCCAAATGTCCACTGAGATAATTATG 1723 ||| || | || || ||||| || | || || || | |||||||| Sbjct 599626 TTCTAGAATACTGATTTGTTGAAATCATAGTGACCGCTTATGTAATTATG 599577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8111705402580