Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_008517.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value seq519 120 5e-24 seq3069 86.0 1e-13 seq2957 77.0 6e-11 >seq519 Length=3254320 Score = 120 bits (132), Expect = 5e-24 Identities = 335/507 (66%), Gaps = 8/507 (2%) Strand=Plus/Plus Query 2099 AAAATCCTATCTAAATTTGAATTTAAATTATGAAATTGTAAAACAAAA-TCTTTGGGAGC 2157 ||||| | | | ||||| ||||| ||||||||| |||||| | ||| |||||||| | Sbjct 1742998 AAAATTCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAACTCTTTGGGT-C 1743056 Query 2158 TTTCTCCCTTAAAATATTGAGGGCCGTAGCTTTGGACCCTGAATTGATTGCCTCGGCATA 2217 ||||| ||| || | | | | | || | |||| ||||| || || | | || Sbjct 1743057 ATTCTCTTTTATTATTTGTAATGTTGAATCTCTTGACCTAGAATTAATCGCTTTAGTGTA 1743116 Query 2218 TGCGTCGTTGGCAGATTGCTGACCTCCTCTAGCAGATCTGCCATCGATTTGGAAAACTCC 2277 | | || | ||||| || ||| ||||||||||| ||||| ||||| ||| | | Sbjct 1743117 TACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATC 1743176 Query 2278 AAAATCAATGAAGTCTCCGTCTTTTTCCACATAGGCCTTGACGTCTGACGAGCTCTTAGC 2337 |||| | | ||||||| || ||||| | || | || || | || | |||| Sbjct 1743177 TCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGA 1743236 Query 2338 TCTCTGAATGTTTGGATGGAAATGTGCTGATCTTGTTGGGGAAACCAGGTCGAAGAATCT 2397 |||| ||| ||||||| || | ||| | ||| | | ||| || |||| Sbjct 1743237 AAATTGAACATTTTGATGGAATTGAATGGTTCTGTTAGGGTGATATATGTCAAAAAATCA 1743296 Query 2398 GTTATTTGTGCATTGGAATTTTCCTTCAAATTGGATGAGCACGTGGATATGAGGTTCCCC 2457 | ||| ||||| |||||| ||| || ||||| || || || | ||| |||||||| Sbjct 1743297 TTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCC 1743356 Query 2458 ATTTTCATGAAGCTCTCTACACACTCTAATGAATAATTTAGAAGT-TGGAGT--TTCTAG 2514 || || || ||| | |||||||| |||||| |||||| | | | || || | Sbjct 1743357 GTTGCTGTGTAGTTCTTTGCACACTCTTATGAAT--TTTAGATTTGTAGGGTAGTTGAGG 1743414 Query 2515 TTTTTGTAATTGGGAAAGTGCCTCTTCTTTTGAAAGAGAACATTTAGGGTATGTAAGAAA 2574 ||||| | || ||| || || ||||||| || |||||| | ||| | || || || Sbjct 1743415 CTTTTG-AGATGATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAA 1743473 Query 2575 ATAATTTTTAGAATTTATATTAAATCT 2601 || |||||| |||||| |||| || Sbjct 1743474 ATGATTTTTGCTATTTATTCTAAACCT 1743500 >seq3069 Length=10854949 Score = 86.0 bits (94), Expect = 1e-13 Identities = 131/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 1304 CAACGCTTTCCTCAGGTTGTGATTGAATTGTACTTGGACGGTGATGATATCTCTGTTCAT 1363 ||| |||||||| |||||| |||||||||| |||| ||||| || || | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1364 CAGGAATGGTCGGTTGTGGTGTTTTGTTATCTTGAAATATAGGGGATTTGGAATCTCCCA 1423 ||||||| | |||||| ||||| ||||||||||||||||||||| | || || Sbjct 3754461 GTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCA 3754520 Query 1424 GATATACACGCCATTCTCTGC-TTGAGCTGCAGTAATGGGTTCCCCTGTGCGTAAATCCA 1482 ||||| ||| |||| | ||| | ||| | ||| | || ||| ||||| |||| || Sbjct 3754521 AATATATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACA 3754579 Query 1483 TTGT 1486 |||| Sbjct 3754580 TTGT 3754583 >seq2957 Length=4215098 Score = 77.0 bits (84), Expect = 6e-11 Identities = 133/187 (71%), Gaps = 10/187 (5%) Strand=Plus/Plus Query 1305 AACGCTTTCCTCAGGTTGTGATTGAATTGTACTTGGACGGTGATGATATC---TCTGTTC 1361 || |||||| | ||||||| ||||| |||| |||| | ||||| | | |||| Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1362 ATCAGGAATGGTCGGTTGTGGTGTTTTGTTATCTTGAAATATAGGGGATTTGGAATCTCC 1421 | ||||| || | |||||| ||||||||||||||| || ||||||| | ||| Sbjct 1238809 TT---GAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCC 1238865 Query 1422 CAGATATACACGCCATTCTCTGC-TTGAGCTGCAGTAATGGGTTCC-CCTGTGCGTAAAT 1479 || |||| || |||| | ||| ||||| ||| | | || |||| | ||||| |||| Sbjct 1238866 TAGGTATATACTTCATTGT-TGCACTGAGCCGCAATGA-GGTTTCCATCAGTGCGAAAAT 1238923 Query 1480 CCATTGT 1486 ||||||| Sbjct 1238924 CCATTGT 1238930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8710083670936