Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_008559.1 Length=2728 Score E Sequences producing significant alignments: (Bits) Value seq519 80.6 5e-12 >seq519 Length=3254320 Score = 80.6 bits (88), Expect = 5e-12 Identities = 335/514 (65%), Gaps = 15/514 (3%) Strand=Plus/Plus Query 2077 AAATTAGCATTTAGATTATGAAATTGTAAAACATAA-TCTTTGGGTGCTAACTCTTTAAT 2135 ||||||| ||| | ||||||| |||||| || || ||||||||| || |||||| || Sbjct 1748825 AAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCTTTGGGT-CTTTCTCTTTTAT 1748883 Query 2136 CACAT-TAAGA--GCCTCTGACTTACTGCCTGTGTTAAGTGCTGCGGCGTAAGCATCATT 2192 | | ||| || ||| ||| ||| | |||| ||| | ||||| |||| Sbjct 1748884 TATTTGTAATGCTGCATCT--CTTGGTGCATAA-TTAATCGCTTCAGCGTATACATCTGC 1748940 Query 2193 GGCTGATTGTTGTCCCCCTCTTGCAGATCGTCCGTCGATCTGAAACTCTCCCCATTCGAG 2252 || || | | || || |||||| ||| || || ||||| || |||| || | Sbjct 1748941 AACTATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTAC 1749000 Query 2253 GGTGTCTCCGTCCTTGTGGATGTAGGACTTGACG--TCGGAGCTGGATTTAACTCCCTGG 2310 |||||| ||||| | ||||| || || || || || | |||||| | || Sbjct 1749001 ATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGA 1749060 Query 2311 ATGTTTGGATGGAAAAGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTC 2370 | ||||||||||| | | || || ||| | | |||||| || | | ||| Sbjct 1749061 ACATTTGGATGGAATTGAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTG 1749119 Query 2371 TTGCACTGGTATTTCCCCTCGAACTGAATAAGCACGTGGAGATGAGGGTTCCCATTTTGG 2430 |||| | ||||||| ||||| | | || || | ||| || ||||| || | Sbjct 1749120 GTGCAGCAGAATTTCCCTGTGAACTAGAGATT-ACATGCAAATGTGG-TTCCCGTTGCTG 1749177 Query 2431 TGGAGCTCTCTGCAGATTTTGATGTATTTTTTATTTGTTGGGGTTTCTAGGTTTTGAAGT 2490 || || |||||||| | ||| ||| |||| |||||| ||| | ||||||| || Sbjct 1749178 TGTAGTTCTCTGCACACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGA 1749237 Query 2491 TGTGAAAGTGCTTCTTCTTTAGTTAAAGAGCA-CTCAGGATATGTAAGAAAATAATTTTT 2549 || ||| | || ||||| || | | || || ||| | || |||||||||||||| Sbjct 1749238 TGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGAAA-GTGAGAAAATAATTTTT 1749296 Query 2550 GGCATTTATTTTGAATTTATTTGGGGGAGCCATT 2583 | ||||||| | || | || |||||||||| Sbjct 1749297 GCTATTTATTCTAAACATGTTATTGGGAGCCATT 1749330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8620486924872