Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_008779.1 Length=2611 Score E Sequences producing significant alignments: (Bits) Value seq1129 149 1e-32 seq519 141 2e-30 seq1694 138 2e-29 >seq1129 Length=1508174 Score = 149 bits (164), Expect = 1e-32 Identities = 174/231 (75%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 1477 GCATTCTTGATCGTCCAGTTTCTGAGTGCAGCGTTTTCCTCTTTGTCGAGGAAATCTTTA 1536 ||||| | || |||| | || |||| ||| | ||||||||||| || |||||||||||| Sbjct 679448 GCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTA 679389 Query 1537 TAGCTTGCACCCTCACCTGGATTGCAAAGCACGATTGCTGGGATACCTCCTTTTATTTGA 1596 |||| ||||| ||||||||||| || | | ||||| ||||| ||||| ||| || Sbjct 679388 TAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGA 679329 Query 1597 ACTGGCTTGCCGTACTTGCAATTTGACTGCCAGTCTTTCTGGGCCCCCAGCAATTCTTTC 1656 || || || || ||||||||||| ||||| ||||| | | |||| | ||| |||||| Sbjct 679328 ACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTT-TTGCCCCCAATCAAATCTTTC 679270 Query 1657 CAGTGCTTTAGCTTT-AGATAGTGCGGTGCGACGTCATCAATGACGTTATA 1706 | ||||| | |||| || |||| || | || ||||| ||||| ||||| Sbjct 679269 TAATGCTTCATCTTTAAGTAAGTG-GGAGTTACATCATCTATGACATTATA 679220 >seq519 Length=3254320 Score = 141 bits (156), Expect = 2e-30 Identities = 174/235 (74%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 1477 GCATTCTTGATCGTCCAGTTTCTGAGTGCAGCGTTTTCCTCTTTGTCGAGGAAATCTTTA 1536 ||||| | | | |||| || |||| || | |||||||| || || |||||||||||| Sbjct 1742258 GCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTA 1742317 Query 1537 TAGCTTGCACCCTCACCTGGATTGCAAAGCACGATTGCTGGGATACCTCCTTTTATTTGA 1596 ||| ||||||||||| | ||| ||| | ||||||| |||||| || ||||| |||| | Sbjct 1742318 TAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAA 1742377 Query 1597 ACTGGCTTGCCGTACTTGCAATTTGACTGCCAGTCTTTCTGGGCCCCCAGCAATTCTTTC 1656 || | || | |||||||||| ||||| ||||| || |||| | |||||||||| Sbjct 1742378 ACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTC 1742437 Query 1657 CAGTG----CTTTAGCTTTAGATA-GTGCGGTGCGACGTCATCAATGACGTTATA 1706 || || || | ||||| || ||| || || || ||||||||||| ||||| Sbjct 1742438 CAATGCTACCTACATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTATA 1742491 >seq1694 Length=789422 Score = 138 bits (152), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 1477 GCATTCTTGATCGTCCAGTTTCTGAGTGCAGCGTTTTCCTCTTTGTCGAGGAAATCTTTA 1536 ||||| | || |||||| || |||| || | |||||||||| || ||||||||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1537 TAGCTTGCACCCTCACCTGGATTGCAAAGCACGATTGCTGGGATACCTCCTTTTATTTGA 1596 ||| ||||| ||||||||||| || | ||||||| || ||| | | ||| |||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1597 ACTGGCTTGCCGTACTTGCAATTTGACTGCCAGTCTTTCTGGGCCCCCAGCAATTCTTTC 1656 || | || || |||||||||| ||||| ||||| || |||| | ||||||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1657 CAGTGCTTTAGCTTT-AGATAGTGCGGTGCGACGTCATCAATGACGTTAT 1705 | ||||| | |||| || |||| || || | ||||||||| | |||| Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTG-GGAGCTGCATCATCAATGTCATTAT 599638 Score = 100 bits (110), Expect = 5e-18 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1510 TTTTCCTCTTTGTCGAGGAAATCTTTATAGCTTGCACCCTCACCTGGATTGCAAAGCACG 1569 ||||||||||| || | ||||||| | ||| |||||| |||| | ||||||| | ||| Sbjct 596237 TTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACG 596178 Query 1570 ATTGCTGGGATACCTCCTTTTATTTGAACTGGCTTGCCGTACTTGCAATT 1619 |||| |||||| || ||||| |||| ||| || || || ||||||||||| Sbjct 596177 ATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATT 596128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8246100521676