Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_008793.1 Length=2762 Score E Sequences producing significant alignments: (Bits) Value seq519 84.2 4e-13 >seq519 Length=3254320 Score = 84.2 bits (92), Expect = 4e-13 Identities = 257/391 (66%), Gaps = 11/391 (3%) Strand=Plus/Plus Query 2233 ACCTCCTCTAGCTGATCTTCCATCGACTTGGAAA--ATTCCAAAGTCAAGGATGTCTCCG 2290 || ||| ||||| ||||||||||| | ||| ||| || ||| || | | |||||| Sbjct 1743138 ACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAA--TCTACGTAGTCTCCC 1743195 Query 2291 TCTTTCTCCATGTAGGTCTTGACATCTGACGAGCTCTTAGCTCCCTGAATGTTTGGATGG 2350 || || || ||||| | || |||| || | |||| |||| ||| ||||| Sbjct 1743196 TCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGG 1743255 Query 2351 AAATGTGCTGACCTAGTTGGG-GATACGAGATCGAAGAATCTTTGATTTGTGCATTGATA 2409 || || | || | ||| |||| | || || |||| |||||| ||||| | Sbjct 1743256 AATTGAATGGTTCTGTTAGGGTGATATATG-TCAAAAAATCATTGATTGGTGCAACAGAA 1743314 Query 2410 TTTCCCTTCGAATTGGATGAGGATGTGGAGATGAGGGCTCCCATCTTCGTGTAATTCTCT 2469 ||| ||| ||| ||||| || | || | ||| || ||| | ||||| |||| | Sbjct 1743315 TTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTT 1743374 Query 2470 GCAGATTCGGATGAACAATTTATTTGTTGGTGTTTCTAGGGCTTGAATTTGGGAAAGTGC 2529 ||| | || ||||| | |||||| || | ||| || | || ||| || Sbjct 1743375 GCACACTCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGC 1743434 Query 2530 TTCTTCTTTGGTAAGAGAGCAGTGTGGGTATGTAAGGAAATAATTTTTGCTATTTATTCT 2589 || ||||| || || || || |||| | || ||||||| |||||||||||||||||| Sbjct 1743435 ATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATTCT 1743494 Query 2590 AAAACGTTTTGGTGGTGCCATATTTACAAAT 2620 ||| | ||| || ||||| ||| |||| Sbjct 1743495 AAACC---TTG--GGAGCCATTTTTTAAAAT 1743520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8729282973664