Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_008794.1 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq519 122 2e-24 seq1129 82.4 1e-12 >seq519 Length=3254320 Score = 122 bits (134), Expect = 2e-24 Identities = 258/371 (70%), Gaps = 22/371 (6%) Strand=Plus/Plus Query 2223 ACCTCCTCTAGCCGATCGTCCATCGATCTGGAAAATTCCATGATCAAGC-ACGT---CTC 2278 || ||| ||||| |||| |||||| || || ||||| ||| |||| | |||| ||| Sbjct 1743138 ACATCCCCTAGCAGATCTTCCATCAATTTG-AAAAT--CATC-TCAATCTACGTAGTCTC 1743193 Query 2279 CGTCTTTTTCCATGTATGATTTAACAT---CTGTTGAGCTTTTAGCTCCCTGAATGTTCG 2335 | || ||||| |||||||||||||||| ||||| ||||| |||| || Sbjct 1743194 CCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGA---TTTAGAAAATTGAACATTTT 1743250 Query 2336 GATGGAAATGTGCTGACCTGTTTGGG-GATATGAGATCGAAGAATCTTTGATTTTTACAC 2394 ||||||| || | ||||| ||| ||||| | || || |||| |||||| | || Sbjct 1743251 GATGGAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAA 1743309 Query 2395 TGGAATTTCCCTTCGAACTGGATGAGGATATGCAGGTGAGGAGTCCCATCTTCGTGTAGT 2454 |||||| ||| ||| ||||| || | ||||| || || ||| | ||||||| Sbjct 1743310 CAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGT 1743369 Query 2455 TCTCTGCAGATTCTGATGAATAATTTAGTAATTG--GGGT-TTCTAGGGCTTTAATTTGG 2511 ||| |||| | ||| |||||| ||||| | ||| |||| | ||| ||| | || Sbjct 1743370 TCTTTGCACACTCTTATGAAT--TTTAG-ATTTGTAGGGTAGTTGAGGCTTTTGAGATGA 1743426 Query 2512 GAAAGTGCTTCCTCTTTGGTAAGAGAACAGTGTGGGTATGTGAGGAAATAGTTTTTGGCA 2571 ||| || || ||||| || || ||||| |||| | |||||||||| |||||| | Sbjct 1743427 TGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTA 1743486 Query 2572 TTTATTCTGAA 2582 |||||||| || Sbjct 1743487 TTTATTCTAAA 1743497 Score = 104 bits (114), Expect = 4e-19 Identities = 263/389 (68%), Gaps = 21/389 (5%) Strand=Plus/Plus Query 2223 ACCTCCTCTAGCCGATCGTCCATCGATCTGGAAA--ATTCCATGATCAAGCACGTCTCCG 2280 || ||| ||| | |||| |||||| || || ||| || ||| ||| | |||||| Sbjct 1748953 ACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCA--ATCTACATAGTCTCCC 1749010 Query 2281 TCTTTTTCCATGTATGATTTAA--CATC---TGTTGAGCTTTTAGCTCCCTGAATGTTCG 2335 || ||||| ||||||||||||| |||| ||||| |||||| |||| || | Sbjct 1749011 TCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGA---TTTAGCATATTGAACATTTG 1749067 Query 2336 GATGGAAATGTGCTGACCTGTTTGGGGATATGAGATCGAAGAATCTTTGATTTTTACACT 2395 ||||||| || | || || ||| | | | ||||| || | |||||| | || Sbjct 1749068 GATGGAATTGAATGGTTCTATTAGGGTTTGT-ATGTCGAAAAACCATTGATTGGTGCAGC 1749126 Query 2396 GGAATTTCCCTTCGAACTGGATGAGGATATGCAGGTGAGGAGTCCCATCTTCGTGTAGTT 2455 |||||||||| ||||| || || | ||||| || || |||| | |||||||| Sbjct 1749127 AGAATTTCCCTGTGAACTAGA-GATTACATGCAAATGTGG-TTCCCGTTGCTGTGTAGTT 1749184 Query 2456 CTCTGCAGATTCTGATGAATAATTTAGTAATTG--GGGT-TTCTAGGGCTTTAATTTGGG 2512 ||||||| | | | ||| |||||| | ||| |||| | ||| ||| | || Sbjct 1749185 CTCTGCACACTTTTATG---AATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGAC 1749241 Query 2513 AAAGTGCTTCCTCTTTGGTAAGAGAACAGTGTGGGTATGTGAGGAAATAGTTTTTGGCAT 2572 ||| | || ||||| || || |||| |||| | ||||| ||||| |||||| || Sbjct 1749242 GAAGAACATCATCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTAT 1749301 Query 2573 TTATTCTGAATTTATTAGGAGGAGCCATT 2601 ||||||| || | ||| ||||||||| Sbjct 1749302 TTATTCTAAACATGTTATTGGGAGCCATT 1749330 >seq1129 Length=1508174 Score = 82.4 bits (90), Expect = 1e-12 Identities = 217/324 (67%), Gaps = 28/324 (9%) Strand=Plus/Minus Query 2277 TCCGTCTTTTTCCATGTATGATTTAACATCTGTTGAGCTTTTAGCTCCCTGAATGTTCGG 2336 ||| || ||||| ||||||||||||| ||| || ||| || | |||| || || Sbjct 678703 TCCCTCCTTTTCAATGTATGATTTAATATCATTT-AGC----AGAT---TGAACATTTGG 678652 Query 2337 ATGGAAATGTGCTGACCTGTTTGGGGATATGAGATCGAAGAATCTTTGATTTTTACACTG 2396 |||| ||| |||| | | |||| ||||| || |||||||| | || Sbjct 678651 ATGGTTCTGTTA----CTGTGTTG---TATG---TCGAAAAACCTTTGATTAGTGCATCA 678602 Query 2397 GAATTTCCCTTCGAACTGGATGAGGATATGCAGGTGAGGA-----GTCCCATCTTCGTGT 2451 |||||||||| |||||||| || | |||| || || | ||| | | | || Sbjct 678601 GAATTTCCCTATGAACTGGAGAAGTACGTGCAAATGTGGTTCCCCGGCCCGTTGTTGCGT 678542 Query 2452 AGTTCTCTGCAGATTCTGATGAATAATTTAGTAATTG--GGGTTTCTAGGGCTTTAATTT 2509 |||| | |||| ||||| ||||| ||||| | ||| |||| | || ||| | | Sbjct 678541 AGTTTTATGCACATTCTTATGAAG--TTTAG-ATTTGTAGGGTAGTTGAGGTTTTGAGAT 678485 Query 2510 GGGAAAGTGCTTCCTCTTTGGTAAGAGAACAGTGTGGGTATGTGAGGAAATAGTTTTTGG 2569 | ||| || || ||||| | |||||||| || | | ||||||||||||||||| Sbjct 678484 GATGAAGAGCATCATCTTTTGAGAGAGAACATCTTGAGAAACTGAGGAAATAGTTTTTGC 678425 Query 2570 CATTTATTCTGAATTTATTAGGAG 2593 ||||||||| ||| | || |||| Sbjct 678424 TATTTATTCTAAATATGTTGGGAG 678401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8674884949268