Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_009030.1 Length=2762 Score E Sequences producing significant alignments: (Bits) Value seq519 127 4e-26 seq1694 89.7 9e-15 seq3069 78.8 2e-11 seq1129 77.0 6e-11 >seq519 Length=3254320 Score = 127 bits (140), Expect = 4e-26 Identities = 247/356 (69%), Gaps = 8/356 (2%) Strand=Plus/Plus Query 2235 TCCTCTAGCACTTCTGCCGTCGATCTGGAATTCCCCCCATTCGAGTGCGTCTCCATCCTT 2294 ||| |||||| ||| || || || || || || | || || | |||||| ||||| Sbjct 1743141 TCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTT 1743200 Query 2295 GTCGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATG 2354 |||||||| || || || | ||| ||||||||| |||| || ||||||| || Sbjct 1743201 TTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTG 1743260 Query 2355 TGTTGACCTGGTTGGG-GATACCAGGTCGAAGAATCTGTTATTTTTGCAGTTGAATTTTC 2413 | | ||| | ||| |||| | ||| || |||| | ||| |||| |||||| | Sbjct 1743261 AATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTAC 1743319 Query 2414 CTTCGAACTGAATAAGCACGTGGAGATGAGGCTCCCCATCTTCGTGTAGTTCTCTGCAAA 2473 || ||| || ||||| || || | ||| || ||||| | |||||||||| |||| | Sbjct 1743320 CTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACA 1743379 Query 2474 TTTTGATGAATTTTTTATTTGTTGGAGTA--TCAGTATTTAATAATTGAGATAGTGCTTC 2531 | | ||||||||| |||||| || ||| | || ||| || || || || || Sbjct 1743380 CTCTTATGAATTTTAGATTTGTAGG-GTAGTTGAGGCTTTTGAGATGATGA-AGAGCATC 1743437 Query 2532 TTCTTTATTTAGAGAGCAT-TTGGGATAAGTGAGGAAATAATTTTTGGAATTTATT 2586 ||||| | || || ||| |||||| |||||||||||| ||||||| ||||||| Sbjct 1743438 ATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCTATTTATT 1743492 Score = 104 bits (114), Expect = 4e-19 Identities = 271/403 (67%), Gaps = 13/403 (3%) Strand=Plus/Plus Query 2235 TCCTCTAGCACTTCTGCCGTCGATCTGGAATTCCCCCCATTCGAGTGCGTCTCCATCCTT 2294 ||| ||| || ||| || || || || || || |||| || | |||||| ||||| Sbjct 1748956 TCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTT 1749015 Query 2295 GTCGATGTAGGACTTGACG--TCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAA 2352 || ||||| || || || || || |||||||||| |||| || |||||||| Sbjct 1749016 TTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAAT 1749075 Query 2353 TGTGTTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTTTTGCAGTTGAATTTT 2412 || | | || || ||| | | |||||| || | | ||| ||||| |||||| Sbjct 1749076 TGAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTC 1749134 Query 2413 CCTTCGAACTGAATAAGCACGTGGAGATGAGGCTCCCCATCTTCGTGTAGTTCTCTGCAA 2472 ||| ||||| | | || || | ||| || |||| | | ||||||||||||||| Sbjct 1749135 CCTGTGAACTAGAGATT-ACATGCAAATGTGGTTCCCGTTGCT-GTGTAGTTCTCTGCAC 1749192 Query 2473 ATTTTGATGAATTTTTTATTTGTTGG--AGTATCAGTATTTAATAATTGAGATAGTGCTT 2530 | ||| |||||||| |||||| || ||| || ||| | | ||| || | | Sbjct 1749193 ACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGA--TGACGAAGAACAT 1749250 Query 2531 CTTCTTTATTTAGAGAGCAT-TTGGGATAAGTGAGGAAATAATTTTTGGAATTTATTTGG 2589 | ||||| | || | ||| |||||| ||||||| |||||||||||| ||||||| Sbjct 1749251 CATCTTTTGTGAGTAAACATCTTGGGA-AAGTGAGAAAATAATTTTTGCTATTTATTCTA 1749309 Query 2590 AAACGCTTAGGAGGAGGCATGTTGGTCAATGGGTACCGATTGA 2632 || ||| |||| ||| || |||| | |||||||||| Sbjct 1749310 AACATGTTATTGGGAGCCATTTT--TCAAATGTTACCGATTGA 1749350 Score = 95.1 bits (104), Expect = 2e-16 Identities = 139/190 (73%), Gaps = 9/190 (5%) Strand=Plus/Plus Query 1301 TTCCTTAGGTTGTGGTTGAATCGGATTTGTACTGTGATGATGTCGTGGTTGTAGTTGAAC 1360 ||||| || |||| |||||| | || || | | |||||||||||||||| ||| || Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1361 GGTCT-CTTTGAGTGTTCCGTG--ATGCTGAAATATAGGGGATTGGCGATTTCCCAGGTA 1417 |||| || || ||| |||| || ||||||| |||| ||| | | |||||| | | Sbjct 1741937 TGTCTCCTCTG---GTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGA 1741993 Query 1418 TAGACGCCACTCTGTGC-CTGATGCACAGTGATGAGTTCCCCGGTGCGTAAATCCATGGT 1476 || || ||| | | ||| |||| || ||||| ||||||||||| | |||||||| || Sbjct 1741994 TATACACCATTGT-TGCACTGA-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGT 1742051 Query 1477 TGCGACAGTT 1486 | | |||||| Sbjct 1742052 TCCTACAGTT 1742061 >seq1694 Length=789422 Score = 89.7 bits (98), Expect = 9e-15 Identities = 125/170 (74%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 1310 TTGTGGTTGAATCGGATTTGTA-CTGTGATGATGTCGTGGTTGTAGTTGAACGGTCTCTT 1368 |||| |||||| | ||||| | || | || ||||||||||||| |||||| ||| || | Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCT-ATAATGTCGTGGTTGTTGTTGAATGGTGTCCT 596583 Query 1369 TGAGTGTTCCGTGATGCTGAAATATAGGGGATTGGCGATTTCCCAGGTATAGACGCCACT 1428 ||||| || || ||||||| || |||| | | |||||| | ||| |||||| | Sbjct 596582 CTAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATT 596523 Query 1429 CTGTGC-CTGATGCACAGTGATGAGTTCCCCGGTGCGTAAATCCATGGTT 1477 | ||| | || |||||||| ||||||| |||| |||||||| ||| Sbjct 596522 GT-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTT 596474 >seq3069 Length=10854949 Score = 78.8 bits (86), Expect = 2e-11 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 1249 TAAGGTTGTCCAGATCTTGAAGGCCATGAAACACTTGTGAATCCCCAGTTCCTTCCTTAG 1308 ||| || |||||||||||||| || | ||| |||| || | ||||| || Sbjct 3754356 TAATGTCGTCCAGATCTTGAAAAATATCCATGCCTTCTGAAATTTCAAGGCTTTCCTGAG 3754415 Query 1309 GTTGTGGTTGAATCGGATTTGTA-CTGTGATGATGTCGTGGTTGTAGTTGAACGGTCTCT 1367 |||| ||||||| | || || | || | ||||||||||||| || ||| || |||||| Sbjct 3754416 GTTGAAGTTGAATTGTATCTGGATCTCT-ATGATGTCGTGGTCGTTGTTAAATGGTCTCC 3754474 Query 1368 TTGAGTGTTCCGTGATGCTGAAATATAGGGGATTGGCGATTTCCCAGGTATAGACGCCAC 1427 | |||| || | |||||||||||||||| | | ||| || |||| ||| || Sbjct 3754475 TCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATATATACGTCAT 3754534 Query 1428 TCTGTGC-CTGATGCACAGTGATGAGTTCCCCGGTGCGTAAATCCATGGTT 1477 | | ||| || | | ||||| || ||| ||||| |||| ||| ||| Sbjct 3754535 TGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTT 3754584 >seq1129 Length=1508174 Score = 77.0 bits (84), Expect = 6e-11 Identities = 127/178 (71%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 1301 TTCCTTAGGTTGTGGTTGAATCGGATTTGTA-CTGTGATGATGTCGTGGTTGTAGTTGAA 1359 ||||| | ||||| |||||| | || || | || | ||||||| |||| ||| |||||| Sbjct 693774 TTCCTAAAGTTGTAGTTGAACTGTATCTGGATCTCT-ATGATGTTGTGGATGTTGTTGAA 693716 Query 1360 CGGTCTCTTTGAGTGTTCCGTGATGCTGAAATATAGGGGATTGGCGATTTCCCAGGTATA 1419 ||||||| | ||||| || || || |||| ||||| | | |||||| ||||| Sbjct 693715 CGGTCTCCTCTGGTGTTGTGTTATCTTGTAATA-GGGGGAATTTAAACTTCCCAAGTATA 693657 Query 1420 GACGCCACTCTGTGCCTGATGCACAGTGATGAGTTCCCCGGTGCGTAAATCCATGGTT 1477 |||||| | | | || | | || ||| || | |||||| || |||||||| ||| Sbjct 693656 TACGCCATTATTTCACTAAGTCGCAATGA-GATATTCCCGGTACGAAAATCCATCGTT 693600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8729282973664