Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_009031.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq519 100 5e-18 seq1694 93.3 7e-16 >seq519 Length=3254320 Score = 100 bits (110), Expect = 5e-18 Identities = 169/235 (72%), Gaps = 10/235 (4%) Strand=Plus/Plus Query 1306 TTCCTCAGGTTGTGGTTGAACCTTATTTGGAATGATATGATGTCTTGGTTCGTGTTGAAT 1365 ||||| || |||| |||||| ||| |||| | ||||||||| ||||| |||| ||| Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1366 GGCCGGCTGTCGTGGTCGA-TGATCTTGAAATAGAGGGGATTTTTTATCTCCCA--GATA 1422 | | || | || ||| | |||||||||||||||| |||| || ||||| |||| Sbjct 1741937 TGTCTCCTCTGGTT-TCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1423 AACACGCCACTCTGTGC-TTGAGCTGCAGTGATGAGTTCCCCGGTGCG-TAATCCATGGC 1480 ||| ||| | | ||| ||||| ||||| ||||||||||| | ||||||| | Sbjct 1741996 TACA--CCATTGT-TGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGT 1742051 Query 1481 TGCTACAATTGATATGTATATAATATGAGCAGCCGCAGTCTAGGTCTATGCGCTT 1535 | ||||| || || ||| |||||| ||| || |||| || || |||||||| Sbjct 1742052 TCCTACAGTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAATGCGCTT 1742106 Score = 80.6 bits (88), Expect = 5e-12 Identities = 113/159 (71%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 2231 TGCTGACCTCCTCTAGCAGATCTTCCGTCGACCTGAAAAGTACCCCAGTCGATGTAATCA 2290 |||| || ||| |||||||||||||| || | |||||| | | || || | ||| || Sbjct 1743133 TGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCT 1743192 Query 2291 CCGTCCTTCTCGATGTAGGACTTGACATCTGATGAGGATTTAGCTCCCTGGAAATTTGGA 2350 || ||||| |||||||| || || |||| || | ||||||| || | |||| || Sbjct 1743193 CCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGA 1743252 Query 2351 TGGAATTGGGAGGAGCTGGTGGGGTGTTGAAGGTCGAAA 2389 |||||||| || ||| | ||||| | | ||| ||| Sbjct 1743253 TGGAATTGAATGGTTCTGTTAGGGTGATATATGTCAAAA 1743291 >seq1694 Length=789422 Score = 93.3 bits (102), Expect = 7e-16 Identities = 148/206 (72%), Gaps = 5/206 (2%) Strand=Plus/Minus Query 1315 TTGTGGTTGAACCTTATTTGGAATGATATGATGTCTTGGTTCGTGTTGAATGGCCGGCTG 1374 |||| ||||||| |||||||| ||| ||||| ||||| |||||||||| || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1375 TCGTGGTCGA-TGATCTTGAAATAGAGGGGATTTTTTATCTCCCAGATAAACACGCCACT 1433 | ||| ||| | |||||||||||||| ||||| || ||||| | | |||||| | Sbjct 596581 TAGTG-TCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATT 596523 Query 1434 CTGTGC-TTGAGCTGCAGTGATGAGTTCCCCGGTGC-GTAATCCATGGCTGCTACAATTG 1491 | ||| |||| |||||| ||||||| |||| ||||||| | | || ||||| Sbjct 596522 GT-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATTA 596464 Query 1492 ATATGTATATAATATGAGCAGCCGCA 1517 |||||| ||||||| ||| || || Sbjct 596463 ATATGTTGGTAATATGTGCAACCACA 596438 Score = 93.3 bits (102), Expect = 7e-16 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 2226 CTGTCTGCTGACCTCCTCTAGCAGATCTTCCGTCGACCTGAAAAGTACCCCAGTCGATGT 2285 |||| |||| || || |||||||||||||| |||| |||||| |||||| || | || Sbjct 599274 CTGTTTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGT 599215 Query 2286 AATCACCGTCCTTCTCGATGTAGGACTTGACATCTGATGAGGATTTAGCTCCCTGGAAAT 2345 | || || ||||| || ||||| || || |||| || | ||||| | ||| | | Sbjct 599214 AGTCTCCCTCCTTTTCAATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACAC 599155 Query 2346 TTGGATGGAATTGGGAGGAGCTGGTGGGGTGTTGAAGGTCGAAA 2389 ||||||||||||| | ||| | |||||| | | ||||||| Sbjct 599154 TTGGATGGAATTGAATAGTTCTGTTAGGGTGTGGTATGTCGAAA 599111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8665285297904