Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_009354.1 Length=2753 Score E Sequences producing significant alignments: (Bits) Value seq519 163 5e-37 seq1694 102 1e-18 seq1129 96.9 6e-17 >seq519 Length=3254320 Score = 163 bits (180), Expect = 5e-37 Identities = 285/408 (70%), Gaps = 10/408 (2%) Strand=Plus/Plus Query 2220 TGCTGTCCTCCTCTTGCAGATCTTCCGTCGATCTGAATCTCTCCCCATTCGAGGGTGTCT 2279 |||| | ||| || ||||||||||| || || |||| || | || || | | |||| Sbjct 1743133 TGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCT 1743192 Query 2280 CCGTCCTTGTCGATGTAGGACTTGACGTCTGAGCTTGATTTAGCTCCCTGAATGTTCGGA 2339 || ||||| |||||||| || || || | ||| ||||||||| |||| || || Sbjct 1743193 CCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGA 1743252 Query 2340 TGGAAATGTGCTGATCTGTTTGGG-GAGACCAAGTCGAAGAATCGCTGATTCTGGCACTT 2398 ||||| || | |||||| ||| || | | ||| || |||| ||||| ||| Sbjct 1743253 TGGAATTGAATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACA 1743311 Query 2399 GTATTTCCCCTCGAACTGGATAAGCACGTGCAGATGAGGTTCCCCATTCTCGTGAAGCTC 2458 | |||| || ||| |||||||| || |||| ||| |||||||| || ||| || || Sbjct 1743312 GAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTC 1743371 Query 2459 TTTGCAGACTTTGATGTATTTTTTATTTGTTGGGGTTTGTAGGTTTTGGATTTGGGAAAG 2518 |||||| ||| | ||| ||||| |||||| ||| | ||| ||| || || ||| Sbjct 1743372 TTTGCACACTCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAG 1743431 Query 2519 TGCCTCTTCTTTAGTTAGAGAGCAT-TTGGGATAAGTGAGGAAATAGTTTTTGCAATAGA 2577 || || ||||| || || || ||| |||||| |||||||||||| ||||||| || | Sbjct 1743432 AGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCTATTTA 1743490 Query 2578 TGTTAAAGCGTTTAGAGGGAGCCATTTTGGTCAATGATCACCGATTGA 2625 | |||| | | |||||||||||| |||| | ||| ||||| Sbjct 1743491 TTCTAAACCTT-----GGGAGCCATTTTTTAAAATG-TTACCAATTGA 1743532 Score = 127 bits (140), Expect = 4e-26 Identities = 274/401 (68%), Gaps = 9/401 (2%) Strand=Plus/Plus Query 2228 TCCTCTTGCAGATCTTCCGTCGATCTGAATCTCTCCCCATTCGAGGGTGTCTCCGTCCTT 2287 ||| || |||||||||| || || |||| || |||| || | |||||| ||||| Sbjct 1748956 TCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTT 1749015 Query 2288 GTCGATGTAGGACTTGACG--TCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAA 2345 || ||||| || || || || || |||||||||| |||| || |||||||| Sbjct 1749016 TTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAAT 1749075 Query 2346 TGTGCTGATCTGTTTGGGGAGACCAAGTCGAAGAATCGCTGATTCTGGCACTTGTATTTC 2405 || | ||| || ||| | |||||| || | ||||| ||| | ||||| Sbjct 1749076 TGAATGGTTCTATTAGGGTTTGT-ATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTC 1749134 Query 2406 CCCTCGAACTGGATAAGCACGTGCAGATGAGGTTCCCCATTCTCGTGAAGCTCTTTGCAG 2465 || ||||| || | || |||| ||| ||||||| | || ||| || ||| |||| Sbjct 1749135 CCTGTGAACTAGAGATT-ACATGCAAATGTGGTTCCCGTTGCT-GTGTAGTTCTCTGCAC 1749192 Query 2466 ACTTTGATGTATTTTTTATTTGTTGGGGTTTGTAGGTTTTGGATTTGGGAAAGTGCCTCT 2525 ||||| ||| |||| |||||| ||| | ||||||| || || ||| | || Sbjct 1749193 ACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGAACATCA 1749252 Query 2526 TCTTTAGTTAGAGAGCAT-TTGGGATAAGTGAGGAAATAGTTTTTGCAATAGATGTTAAA 2584 ||||| || || | ||| |||||| ||||||| ||||| ||||||| || || |||| Sbjct 1749253 TCTTTTGTGAGTAAACATCTTGGGA-AAGTGAGAAAATAATTTTTGCTATTTATTCTAAA 1749311 Query 2585 GCGTTTAGAGGGAGCCATTTTGGTCAATGATCACCGATTGA 2625 ||| |||||||||||| |||| | ||||||||| Sbjct 1749312 CATGTTATTGGGAGCCATTTT--TCAAATGTTACCGATTGA 1749350 >seq1694 Length=789422 Score = 102 bits (112), Expect = 1e-18 Identities = 210/307 (68%), Gaps = 13/307 (4%) Strand=Plus/Minus Query 2372 GTCGAAGAATCGCTGATTCTGGCACTTGTATTTCCCCTCGAACTGGATAAGCACGTGCAG 2431 |||||| || ||||| ||| | | ||||||| |||||||| ||| ||||||| Sbjct 588249 GTCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 588190 Query 2432 ATGAGGTTCCCCATTCTCGTGAAGCTCTTTGCAGACTTTGATGTATTTTTTATTTGTTGG 2491 ||| |||||||| | ||| || ||| |||| || | ||| |||| |||||| | Sbjct 588189 ATGTGGTTCCCCGGTGCTGTGCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAAG 588130 Query 2492 GGTTTGTAGGTTTTGGATTTGGGAAAGTGCCTCTTCTTTAGTTAGAGAGCAT-TTGGGAT 2550 | ||||||| || || ||| | || ||||| | ||||| ||| |||||| Sbjct 588129 ATAGTTGAGGTTTTTGAGATGATGAAGAACATCATCTTTTGAGAGAGAACATCTTGGGA- 588071 Query 2551 AAGTGAGGAAATAGTTTTTGCAATAGATGTTAAAGCGTTTAGAGGGAGCCATTTTGGTCA 2610 |||||||||||||||||| || || || |||| | || ||||||||||| ||| Sbjct 588070 AAGTGAGGAAATAGTTTTAGCTATTTATTCTAAACCTGTT---CGGAGCCATTTTTTTCA 588014 Query 2611 ATGATCACCGATTGA----CTCGCTC---TTGCAACTCTCTCTGGTATTTTGGTGATCAA 2663 | ||| || ||| ||| ||| |||| | |||| ||||||||| ||| Sbjct 588013 AATGTCATTGACTGAAAAGCTCACTCAAAGTGCACTACCAAGTGGTGTTTTGGTGA-CAA 587955 Query 2664 TATATAG 2670 ||||||| Sbjct 587954 TATATAG 587948 Score = 100 bits (110), Expect = 5e-18 Identities = 272/412 (66%), Gaps = 6/412 (1%) Strand=Plus/Minus Query 2215 CTGTCTGCTGTCCTCCTCTTGCAGATCTTCCGTCGATCTGAATCTCTCCCCATTCGAGGG 2274 |||| |||| | || || ||||||||||| ||||| |||| || ||||| || | | Sbjct 599274 CTGTTTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGT 599215 Query 2275 TGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCTGAGCTTGATTTAGCTCCCTGAATGT 2334 |||||| ||||| || ||||| || || || | ||| |||||| | ||||| Sbjct 599214 AGTCTCCCTCCTTTTCAATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACAC 599155 Query 2335 TCGGATGGAAATGTGCTGATCTGTTTGGGGAGACCAAGTCGAAGAATCGCTGATTCTGGC 2394 | |||||||| || | |||||| ||| | |||||| || | |||| | Sbjct 599154 TTGGATGGAATTGAATAGTTCTGTTAGGGTGTGGTATGTCGAA-AACCTTTGATAGGTTC 599096 Query 2395 ACTTGTATTTCCCCTCGAACTGGATAAGCACGTGCAGATGAGGTTCCCCATTCTCGTGAA 2454 | | |||| || ||| | || ||| ||||| | ||| |||||||| || || | Sbjct 599095 AACAGAATTTTCCTGTGAATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGTCTA 599036 Query 2455 GCTCTTTGCAGACTTTGATGTATTTTTTATTTGTTG-GGGTTTGTAGGTTTTGGATTTGG 2513 ||| ||| ||| | ||| |||| |||| | | | ||| | |||| || || Sbjct 599035 ATTCTCAGCACACTCTTATGAATTTGAGATTTATAGCGTAGTTGGGGTTTTTTGAAATGA 598976 Query 2514 GAAAGTGCCTCTTCTTTAGTTAGAGAGCATTTGGGATAAGTGAGGAAATAGTTTTTGCAA 2573 ||| | || ||||| ||||||||| | || ||||| ||||||||||| || | Sbjct 598975 TGAAGAACATCATCTTTTAAGAGAGAGCATCTTGGTAAAGTGTGGAAATAGTTTAAGCTA 598916 Query 2574 TAGATGTTAAAGCGTTTAGAGGGAGCCATTTTGGTCAATGATCACCGATTGA 2625 | || |||| || |||| ||||||| |||| |||||| ||||| Sbjct 598915 TTTATTCTAAA---CTTGTTGGGAACCATTTT-TTCAAATATCACCAATTGA 598868 >seq1129 Length=1508174 Score = 96.9 bits (106), Expect = 6e-17 Identities = 273/412 (66%), Gaps = 12/412 (3%) Strand=Plus/Minus Query 2216 TGTCTGCTGTCCTCCTCTTGCAGATCTTCCGTCGATCTGAATCTCTCCCCATTCGAGGGT 2275 ||| |||| | || || ||||||||| || || | || || || || || | | Sbjct 695266 TGTTTGCTTACATCTCCTAGCAGATCTTTGATCAATTTCAAAATCACCTCAATCTACGTA 695207 Query 2276 GTCTCCGTCCTTGTCGATGTAGGACTTGACGTCTGAGCTTGATTTAGCTCCCTGAATGTT 2335 ||||| ||||| || ||||| || || || || ||| | ||||||| |||| || Sbjct 695206 CTCTCCCTCCTTTTCAATGTACGAGTTAACATCAGAGGCTAATTTAGCAGATTGAACATT 695147 Query 2336 CGGATGGAAATGTGCTGATCTGTTTGGGGAGACCAAGTCGAAGAATCGCTGATTC-TGGC 2394 | |||||| | | | |||| ||| | |||||| || | ||||| ||| Sbjct 695146 TGTATGGAATTAGATAGTTTTGTTAGGGTGTTTTATGTCGAAAAACCTTTGATTGATGGA 695087 Query 2395 ACTTGTATTTCCCCTCGAACTGGATAAGCACGTGCAGATGAGGTTCCCCATTCTCGTGAA 2454 || | |||||| |||||||| ||| | |||| || |||||||| || ||| | Sbjct 695086 ACA-GAATTTCCTTGTGAACTGGAGAAGTATGTGCGAATATGGTTCCCCGTTGCTGTGTA 695028 Query 2455 GCTCTTTGCAGACTTTGATGTATTTTTTATTTGTTGGGGTTTGTAGGTTTTGGATTTGGG 2514 | | | | || ||| ||| ||||| ||||||| ||| | ||| ||| || || Sbjct 695027 GTTTTCTACA--CTT--ATGAATTTTATATTTGTAGGGTAGTTGAGGATTTTGAGATGAT 694972 Query 2515 AAAGTGCCTCTTCTTTAGTTAGAGAGCATTTGGGATAAGTGAGGAAATAGTTTTTGCAAT 2574 ||| | || ||| | | ||||| ||| | || ||||||||||||||||||||| || Sbjct 694971 GAAGACCATCATCTATTGAGAGAGAACATCTAGGGAAAGTGAGGAAATAGTTTTTGCTAT 694912 Query 2575 AGATGTTAAAGC-GTTTAGAGGGAGCCATTTTGGTCAATGATCACCGATTGA 2625 || || | | ||||| | |||||||| |||| | ||||||||| Sbjct 694911 TTATTCTATACCTGTTTA----GGGCCATTTT-TTCAAATGTAACCGATTGA 694865 Score = 95.1 bits (104), Expect = 2e-16 Identities = 278/423 (66%), Gaps = 38/423 (9%) Strand=Plus/Minus Query 2215 CTGTCTGCTGTCCTCCTCTTGCAGATCTTCCGTCGATCTGAATCTCTCCCCATTCGAGGG 2274 |||| |||| | ||| || ||| ||||||| || || |||| || ||||| || | Sbjct 678772 CTGTTTGCTTACATCCCCTAGCATATCTTCCTTCAATTTGAAAATCACCCCAATCTACAT 678713 Query 2275 TGTCTCCG-----TCCTTGTCGATGTAGGACTTGACGTCTGAGCTTGATTTAGCTCCCTG 2329 ||||||| ||||| || ||||| || || | || ||||||| || Sbjct 678712 AGTCTCCGATCCCTCCTTTTCAATGTATGATTTAATATC--------ATTTAGCAGATTG 678661 Query 2330 AATGTTCGGATGGAAATGTGCTGAT-CTGTTTGGGGAGACCAAGTCGAAGAATCGCTGAT 2388 || || |||||| | ||| | |||| | | | |||||| || | |||| Sbjct 678660 AACATTTGGATGG-----TTCTGTTACTGTGTTGT------ATGTCGAAAAACCTTTGAT 678612 Query 2389 TCTGGCACTTGTATTTCCCCTCGAACTGGATAAGCACGTGCAGATGAGGTTCCCCA---- 2444 | ||| | ||||||| |||||||| ||| ||||||| ||| |||||||| Sbjct 678611 TAGTGCATCAGAATTTCCCTATGAACTGGAGAAGTACGTGCAAATGTGGTTCCCCGGCCC 678552 Query 2445 -TTCTCGTGAAGCTCTTTGCAGACTTTGATGTATTTTTTATTTGTTGGGGTTTGTAGGTT 2503 || | | | || | | |||| | | | ||| | ||| |||||| ||| | ||||| Sbjct 678551 GTTGTTGCGTAGTTTTATGCACATTCTTATGAAGTTTAGATTTGTAGGGTAGTTGAGGTT 678492 Query 2504 TTGGATTTGGGAAAGTGCCTCTTCTTTAGTTAGAGAGCAT-TTGGGATAAGTGAGGAAAT 2562 ||| | || ||| || || ||||| | ||||| ||| ||| || || ||||||||| Sbjct 678491 TTG-AGATGATGAAGAGCATCATCTTTTGAGAGAGAACATCTTGAGA-AACTGAGGAAAT 678434 Query 2563 AGTTTTTGCAATAGATGTTAAAGCGTTTAGAGGGAGCCATTTTGGTCAATGATCACCGAT 2622 ||||||||| || || |||| | | |||||||| ||| |||| ||| |||| Sbjct 678433 AGTTTTTGCTATTTATTCTAAA---TATGTTGGGAGCCACTTT--TCAAATGTCATCGAT 678379 Query 2623 TGA 2625 ||| Sbjct 678378 TGA 678376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8700484019572