Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_009451.1 Length=2760 Score E Sequences producing significant alignments: (Bits) Value seq519 91.5 3e-15 seq3069 87.8 3e-14 seq1694 82.4 1e-12 >seq519 Length=3254320 Score = 91.5 bits (100), Expect = 3e-15 Identities = 169/243 (70%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 2068 GCAAAAATCCTATCTAAATTTGATTTTAAATTATGATACTGGAAAATAAAATCTCTT-GG 2126 || ||||| | | | ||||| || || ||||||||||| || | | | ||| ||||| || Sbjct 1742995 GCGAAAATTCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAA-CTCTTTGG 1743053 Query 2127 GAGTTTCTCCCTAATAACATTTAAAGCAGCTTCAGCAGACCCAGAATTTAATGCCTCAGC 2186 | ||||| | || | | ||| | | || |||| |||||| | || | || Sbjct 1743054 GTCATTCTCTTTTATTATTTGTAATGTTGAATCTCTTGACCTAGAATTAATCGCTTTAG- 1743112 Query 2187 TGCAG-CATCGTTAGCTGTCTGTTGACCTCCTCTAGCAGATCTTCCATCGATCTGAAATC 2245 || | |||| | || | || | || ||| ||||||||||||||||| || ||||| Sbjct 1743113 TGTATACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAAT 1743172 Query 2246 GACCCCATTCGACGTAATCTCCGTCCTTCTCGATGTATCTCTTGACATCAGAGCTGGATC 2305 | | || || ||||| ||||| ||||| ||||||||| || |||| |||| | ||| Sbjct 1743173 CATCTCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATT 1743232 Query 2306 TAG 2308 ||| Sbjct 1743233 TAG 1743235 Score = 80.6 bits (88), Expect = 5e-12 Identities = 170/250 (68%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 2063 GAGGTGCAAAAATCCTATCTAAATTTGATTTTAAATTATGATACTGGAAAATAAAATCTC 2122 |||| || || || | | | ||||| || || ||||||||||| || | ||| ||| ||| Sbjct 1748805 GAGGGGCGAATATTCGACCCAAATTAGAATTGAAATTATGATATTGTAGAATGAAA-CTC 1748863 Query 2123 TT-GGGAGTTTCTCCCTAATAACATTTAAAGCAGCTTCAGCAGACCCAGAATTTAATGCC 2181 || ||| |||||| | || | | ||| || || || | || |||| | || Sbjct 1748864 TTTGGGTCTTTCTCTTTTATTATTTGTAATGCTGCATCTCTTGGTGCATAATTAATCGCT 1748923 Query 2182 TCAGCTGCAGCATCGTTAGCTGTCTGTTGACCTCCTCTAGCAGATCTTCCATCGATCTGA 2241 ||||| |||| | || | | | || ||| ||| ||||||||||||| || ||| Sbjct 1748924 TCAGCGTATACATCTGCAACTATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGA 1748983 Query 2242 AATCGACCCCATTCGACGTAATCTCCGTCCTTCTCGATGTATCTCTTGA--CATCAGAGC 2299 || | |||| || || || ||||| ||||| || |||||| || | ||||| || Sbjct 1748984 AAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGG 1749043 Query 2300 TGGATCTAGC 2309 | ||| |||| Sbjct 1749044 TTGATTTAGC 1749053 >seq3069 Length=10854949 Score = 87.8 bits (96), Expect = 3e-14 Identities = 166/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 1216 AGTCTGAGGAGTTAAACTCGTCCAGATCCGGAAGGTTAGCCAACATTTGTGAAGTCCCAG 1275 |||| ||| ||||| ||||||||||| ||| || ||| || |||| | || Sbjct 3754344 AGTCGAAGGTGTTAATGTCGTCCAGATCTTGAAAAATATCCATGCCTTCTGAAATTTCAA 3754403 Query 1276 TGCTCTCCTCAGGTTGTGGTTGAACCGGATCTGGATTGTTATTATGTCGTGGTTCCGGAA 1335 ||| |||| |||||| |||||| | |||||||| ||| |||||||||| | Sbjct 3754404 GGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTT 3754463 Query 1336 GAATGGTCGGTCCAGGTGGCTTAGGATCCTGAAATAGAGGGGATTTGGAACCTCCCAGAT 1395 ||||||| | |||| | | | | ||||||| ||||||||||| || || || || Sbjct 3754464 AAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAAT 3754523 Query 1396 ATACACGCCATTCATTGC-TTGAGCTGCAGTGATGGACTCCCCTGTGCGTGAATCCATGG 1454 ||| ||| |||| |||| | ||| | ||||| | ||| ||||| ||| ||| | Sbjct 3754524 ATATACGTCATT-GTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTG 3754582 Query 1455 TT 1456 || Sbjct 3754583 TT 3754584 >seq1694 Length=789422 Score = 82.4 bits (90), Expect = 1e-12 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 2201 CTGTCTGTTGACCTCCTCTAGCAGATCTTCCATCGATCTGAAATCGACCCCATTCGACGT 2260 |||| || | || || |||||||||||||||||||| ||||| |||||| || |||| Sbjct 599274 CTGTTTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGT 599215 Query 2261 AATCTCCGTCCTTCTCGATGTATCTCTTGACATCAGAG 2298 | ||||| ||||| || |||||| || |||| |||| Sbjct 599214 AGTCTCCCTCCTTTTCAATGTATGATTTAACATTAGAG 599177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8722883206088