Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_009490.1 Length=2609 Score E Sequences producing significant alignments: (Bits) Value seq1129 185 1e-43 seq519 161 2e-36 seq1694 150 3e-33 >seq1129 Length=1508174 Score = 185 bits (204), Expect = 1e-43 Identities = 259/359 (72%), Gaps = 6/359 (2%) Strand=Plus/Minus Query 1499 AGTGCAGCATTTTCCTCTTTGTCGAGGAAATCTTTATAGCTGCCCCCCTCTCCTGGATTG 1558 || ||| ||||||||||||| || |||||||||||||||| | || || |||||||| Sbjct 679424 AGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTA 679365 Query 1559 CACAGCACGATTGATGGGATACCACCTTTAATTTGAACCGGCTTTCCATATTTACAGTTG 1618 |||| | ||||||||||| |||||||||| |||| || || ||||| || || || Sbjct 679364 CACAATAAGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTA 679305 Query 1619 GACTGCCAATCCTTTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAGCTTTAGGT-AGTG 1677 ||||||| ||||| | |||||||||| |||||| | ||||| | ||||| || |||| Sbjct 679304 CTTTGCCAAT-CTTTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTG 679246 Query 1678 CGGTGCGACATCATCAATGACGTTATACTCCACATGATTGGAGTAAACCCTAGAATTGAA 1737 || | |||||||| ||||| ||||| ||| |||| | | || ||||| Sbjct 679245 -GGAGTTACATCATCTATGACATTATATGTTGCATCATTGTGGAATACTGATTTGTTGAA 679187 Query 1738 ATCTAA---ATGACCGCTCAAGTAGTTATGTGGGCCTAAAGCACGAGCCCACATTGTCTT 1794 |||||| ||| ||| | | ||| ||||| || | | | || ||| | | || || Sbjct 679186 ATCTAAGTGATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTT 679127 Query 1795 GCCCGTTCGTGATTCCCCTTCGACGATAATACTAATAGGTCTCTCTGGCCGCGCAGCGG 1853 ||| |||| | ||||| | ||| ||||| ||||||| ||||||| |||| ||| Sbjct 679126 GCCTATTCGACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq519 Length=3254320 Score = 161 bits (178), Expect = 2e-36 Identities = 182/241 (76%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 1469 AATTTAGCATTTTTTAATGTCCAAGCTCTCAGTGCAGCATTTTCCTCTTTGTCGAGGAAA 1528 |||| |||||||| || ||||| | || || |||||||||| || || |||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1529 TCTTTATAGCTGCCCCCCTCTCCTGGATTGCACAGCACGATTGATGGGATACCACCTTTA 1588 ||||||||| | ||||| | | ||| ||||| |||||||||||||| ||||||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1589 ATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCCAATCCTTTTGGGCCCCAATCAAT 1648 |||| ||| | || | | | || || || |||||||| ||||| ||||||||||| Sbjct 1742372 ATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAAT 1742431 Query 1649 TCTTTCCAGTG----CTTTAGCTTTAGGTA-GTGCGGTGCGACATCATCAATGACGTTAT 1703 |||||||| || || | ||||| ||| ||| || || |||||||||||||| |||| Sbjct 1742432 TCTTTCCAATGCTACCTACATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTAT 1742490 Query 1704 A 1704 | Sbjct 1742491 A 1742491 >seq1694 Length=789422 Score = 150 bits (166), Expect = 3e-33 Identities = 213/297 (72%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 1469 AATTTAGCATTTTTTAATGTCCAAGCTCTCAGTGCAGCATTTTCCTCTTTGTCGAGGAAA 1528 |||| ||||||| | |||||| | || || |||||||||||| || ||||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1529 TCTTTATAGCTGCCCCCCTCTCCTGGATTGCACAGCACGATTGATGGGATACCACCTTTA 1588 ||||||||| | || || |||||||| |||| |||||||||| ||| ||| |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1589 ATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCCAATCCTTTTGGGCCCCAATCAAT 1648 |||||||| | || ||||| || || | |||||||| ||||| ||||||| ||| Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1649 TCTTTCCAGTGCTTTAGCTTTAGGTA-GTGCGGTGCGACATCATCAATGACGTTATACTC 1707 |||||| | ||||| | ||||| ||| ||| || || ||||||||||| | |||| Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTG-GGAGCTGCATCATCAATGTCATTATCTGG 599634 Query 1708 CACATGATTGGAGTAAACCCTAGAATTGAAATCTAAATGACCGCTCAAGTAGTTATG 1764 ||| ||| || | || |||||||| | |||||||| | ||| ||||| Sbjct 599633 TGCATCATTCTAGAATACTGATTTGTTGAAATCATAGTGACCGCTTATGTAATTATG 599577 Score = 100 bits (110), Expect = 5e-18 Identities = 113/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 1469 AATTTA-GCATTTTTTAATGTCCAAGCTCTCAGTGCAGCATTTTCCTCTTTGTCGAGGAA 1527 |||||| |||| || | || |||| |||| || ||||||||||||| || | ||| Sbjct 596277 AATTTATGCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAA 596218 Query 1528 ATCTTTATAGCTGCCCCCCTCTCCTGGATTGCACAGCACGATTGATGGGATACCACCTTT 1587 |||| | ||| | || || | | ||||||||| |||||||||||||| |||||||| Sbjct 596217 ATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTT 596158 Query 1588 AATTTGAACCGGCTTTCCATATTTACAGTT 1617 ||||| ||| || || ||||| || || || Sbjct 596157 AATTTTAACGGGTTTCCCATACTTGCAATT 596128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8239700754100