Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_009545.1 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq3069 111 3e-21 seq519 87.8 3e-14 >seq3069 Length=10854949 Score = 111 bits (122), Expect = 3e-21 Identities = 161/223 (72%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 1315 CAATGCTTTCCGAAGGTTGTAGTTGAATTGTATCCTTATTGTTATGATGTCTGTCTCCAT 1374 ||| ||||||| |||||| |||||||||||||| || ||||||||| || | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1375 GAGGAATGGTCGGTTCTCGTGGTTGATG--ATCTTGAAATATAGGGGATTTGTTATTGTC 1432 | ||||||| ||| ||| | ||| | |||||||||||||||||||| || | Sbjct 3754461 GTTAAATGGTCTCCTCTGGTG--TCATGTTAACTTGAAATATAGGGGATTTGGTACTTCT 3754518 Query 1433 CAGATATAGACGCCATTCTCTGC-TTGAGCTGCAGTGATAAGTTCCCCTGTGCGAGAATC 1491 || ||||| ||| |||| | ||| | ||| | ||||| | || ||| |||||| ||| Sbjct 3754519 CAAATATATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATA 3754577 Query 1492 CATGGTTGACACAGTTTATTGATAGGTAGTATGTGCAACCACA 1534 ||| ||| || || || | ||||||||||||||||||| Sbjct 3754578 CATTGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACA 3754620 >seq519 Length=3254320 Score = 87.8 bits (96), Expect = 3e-14 Identities = 153/217 (71%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 1321 TTTCCGAAGGTTGTAGTTGAATTGTATCCTTATTGTTATGATGTCTGTCTCCATGAGGAA 1380 ||||| || ||||||||||| |||||| ||| ||||||||| | || || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1381 TGGTCGGTTCTCGTGGTTGATG--ATCTTGAAATATAGGGGATTTGTTATTGTCCAGATA 1438 | ||| | ||| | || || ||||||||||| |||| ||||| || | ||| | Sbjct 1741936 TTGTC--TCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGA 1741993 Query 1439 TAGACGCCATTCTCTGC-TTGAGCTGCAGTGATAAGTTCCCCTGTGCGAGAATCCATGGT 1497 || || ||||| | ||| ||||| ||||| | ||||||| ||| || ||||||| || Sbjct 1741994 TATACACCATTGT-TGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGT 1742051 Query 1498 TGACACAGTTTATTGATAGGTAGTATGTGCAACCACA 1534 | |||||| || | |||| ||| |||||||||| Sbjct 1742052 TCCTACAGTTAATGTGTTGGTAATATATGCAACCACA 1742088 Score = 84.2 bits (92), Expect = 4e-13 Identities = 249/379 (66%), Gaps = 5/379 (1%) Strand=Plus/Plus Query 2256 TCCTCTAGCACTCCTTCCGTCGATCTGGAATTCTCCCCATTCCAGTGTGTCTCCGTCCTT 2315 ||| ||| || ||||| || || || || || |||| || | |||||| ||||| Sbjct 1748956 TCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTT 1749015 Query 2316 GTCGATATAGGACTTGAC--ATCGGAGCTTGATTTAGCTCCCTGTATGTTCGGATGGAAA 2373 || || || || || || ||| || |||||||||| || | || |||||||| Sbjct 1749016 TTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAAT 1749075 Query 2374 TGTGTTGACCGGGTTGGGGATACAAGGTCGAAGAATCGTTTATTCGTGCAGACGTATTTC 2433 || | | | || ||| | | |||||| || | || ||| |||||| | ||||| Sbjct 1749076 TGAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTC 1749134 Query 2434 CCCTCGAATTGAATAAGCACGTGGAGATGAGGGCTCCCATCTTCGTGTAGCTCTCTGCAG 2493 || ||| | | | || || | ||| || |||| | |||||| |||||||| Sbjct 1749135 CCTGTGAACTAGAGATT-ACATGCAAATGTGGT-TCCCGTTGCTGTGTAGTTCTCTGCAC 1749192 Query 2494 ATTTTAATGAATTTTTTATTTGTTGGACAAACTAGGTTACTTAATTGGGAAAGTGTTTCT 2553 | ||| |||||||| |||||| || | ||||| | | || ||| || Sbjct 1749193 ACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGAACATCA 1749252 Query 2554 TCTTTGGTGAGAGAGCAGTGTGGGTATGTAAGAAAATAATTTCTGGCTGAAACTCTAAAT 2613 ||||| ||||| | || |||| | || |||||||||||| || | |||||| Sbjct 1749253 TCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATTCTAAAC 1749312 Query 2614 CTGTTATTCGGAGCCATTT 2632 ||||||| |||||||||| Sbjct 1749313 ATGTTATTGGGAGCCATTT 1749331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8726083089876