Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_009546.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq1129 87.8 3e-14 >seq1129 Length=1508174 Score = 87.8 bits (96), Expect = 3e-14 Identities = 123/169 (73%), Gaps = 9/169 (5%) Strand=Plus/Minus Query 1692 CCTGGATTGCAGAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTAC 1751 |||||||| || | ||||| | ||||| |||||||||| ||| |||||||| ||| Sbjct 679373 CCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATAC 679314 Query 1752 TTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTT------T 1805 || || |||||||| || |||| |||| || || ||||| | ||||| | Sbjct 679313 TTGCAATTACTTTGCCAATCTTTTTGC-CCCCAATCAAATCTTTCTAATGCTTCATCTTT 679255 Query 1806 AGGTA-GTGGGGGTCTACGTCATCTATGACGTTGTACCATGCATCATTG 1853 | ||| ||||| || ||| ||||||||||| || || |||||||||| Sbjct 679254 AAGTAAGTGGGAGT-TACATCATCTATGACATTATATGTTGCATCATTG 679207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8713283554724