Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_009547.1 Length=2753 Score E Sequences producing significant alignments: (Bits) Value seq519 122 2e-24 >seq519 Length=3254320 Score = 122 bits (134), Expect = 2e-24 Identities = 236/343 (69%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 2230 CCTCTTGCAGATCGTCCGTCGATCTGAAACTCGCCCCACTCGAGGGTGTCTCCGTCCTTA 2289 || || ||||||| ||| || || ||||| || | || || | | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2290 TCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGT 2349 |||||||| || || || | ||| | ||||||| || | || ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2350 GCTGACCTGGTTGGG-GATACCAGGTCGAAGAATCTGTTATTCGTGCAGACGTATTTTCC 2408 | ||| | ||| |||| | ||| || |||| | ||| ||||| | |||| || Sbjct 1743262 ATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2409 CTCGAACTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCGTGAAGTTCTCTGCAGA- 2467 ||| |||||||| || || | ||| || ||| | ||| |||||| |||| | Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2468 TCTTGATGTATTTTTTATTTGTGGGGGTGTTTAGGTTTTGTAGTTGGGAAAGTGCCTCCT 2527 |||| ||| ||||| |||||| ||| ||| ||| ||| || || ||| || || | Sbjct 1743381 TCTT-ATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCAT 1743439 Query 2528 CTTTGGTGAGAGAGCACTGTGGATAAGTGAGGAAATAATTTTT 2570 |||| ||||| || || ||| |||||||||||| |||||| Sbjct 1743440 CTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTT 1743482 Score = 93.3 bits (102), Expect = 7e-16 Identities = 225/336 (67%), Gaps = 5/336 (1%) Strand=Plus/Plus Query 2237 CAGATCGTCCGTCGATCTGAAACTCGCCCCACTCGAGGGTGTCTCCGTCCTTATCGATGT 2296 |||||| ||| || || ||||| || |||| || | |||||| ||||| || |||| Sbjct 1748964 CAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGT 1749023 Query 2297 AGGACTTGACG--TCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGA 2354 | || || || || || | |||||||| || | || |||||||| || | Sbjct 1749024 ATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGT 1749083 Query 2355 CCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCAGACGTATTTTCCCTCGAA 2414 || || ||| | | |||||| || | | ||| |||||| | |||| || ||| Sbjct 1749084 TCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAA 1749142 Query 2415 CTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCGTGAAGTTCTCTGCAGATCTTGAT 2474 || || | || || | ||| || |||| | ||| ||||||||||| | || || Sbjct 1749143 CTAGAGATT-ACATGCAAATGTGGT-TCCCGTTGCTGTGTAGTTCTCTGCACACTTTTAT 1749200 Query 2475 GTATTTTTTATTTGTGGGGGTGTTTAGGTTTTGTAGTTGGGAAAGTGCCTCCTCTTTGGT 2534 | |||| |||||| ||| ||| ||||||| || || ||| | || ||||| || Sbjct 1749201 GAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGAACATCATCTTTTGT 1749260 Query 2535 GAGAGAGCACTGTGGATAAGTGAGGAAATAATTTTT 2570 ||| | || ||| ||||||| ||||||||||| Sbjct 1749261 GAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTT 1749296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8700484019572