Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_009548.1 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq3069 147 4e-32 seq1694 118 2e-23 seq2957 113 8e-22 seq519 113 8e-22 seq1129 80.6 5e-12 >seq3069 Length=10854949 Score = 147 bits (162), Expect = 4e-32 Identities = 205/285 (72%), Gaps = 2/285 (1%) Strand=Plus/Plus Query 1247 GTCCAGATCTGGAAGATTAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGG 1306 |||||||||| ||| | || | || || | | ||| |||||||| |||||| | Sbjct 3754363 GTCCAGATCTTGAAAAATATCCATGCCTTCTGAAATTTCAAGGCTTTCCTGAGGTTGAAG 3754422 Query 1307 TTGAATTGTATTTGGATCTTTATGATGTCGTGGTTGGTGTTGAATGGCCTCTCGTGGTGC 1366 ||||||||||| ||||||| |||||||||||||| | |||| ||||| ||| ||||| Sbjct 3754423 TTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTAAATGGTCTCCTCTGGTGT 3754482 Query 1367 TTGGTTATCTTGAAATATAGGGGATTTTTGATCGTC-CAGGTATACACGCCATTCTCGCA 1425 |||| |||||||||||||||| ||| | | || || |||| ||| |||| | ||| Sbjct 3754483 CATGTTAACTTGAAATATAGGGGA-TTTGGTACTTCTCAAATATATACGTCATTGTTGCA 3754541 Query 1426 TTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCATGATTTGCGCAATCTATGCCGA 1485 | || | |||||| || ||| |||||||||| ||| || ||||| ||| | Sbjct 3754542 CTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTTCTTGCAATTAATGTCTT 3754601 Query 1486 AGTAGTATGAGCACCCGCACGTTAGATCAACTCTCCGTCTCCGAA 1530 |||||||| ||| || || || || ||| | | ||||| || Sbjct 3754602 GGTAGTATGTGCAACCACATTATATATAAACACGCTTTCTCCTAA 3754646 >seq1694 Length=789422 Score = 118 bits (130), Expect = 2e-23 Identities = 127/167 (76%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1301 TTGTGGTTGAATTGTATTTGGATCTTTATGATGTCGTGGTTGGTGTTGAATGG---CCTC 1357 |||| |||||| ||||||||||||| ||| |||||||||||| |||||||||| |||| Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1358 TCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATCGTCCAGGTATACACGCCA 1417 | ||| | |||||||||||||| || ||||| | ||| | ||| |||||| Sbjct 596581 TAGTGTCGT---GTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCA 596525 Query 1418 TTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1464 || | ||| ||| ||||||| |||||| |||| ||||||||| Sbjct 596524 TTGTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT 596478 Score = 100 bits (110), Expect = 5e-18 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 1289 GCTTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCTTTATGATGTCGTGGTTGGTGTTG 1348 |||||||| | || || |||||| | ||| | ||||| |||||||||| ||||| ||||| Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1349 AATGGCCTCTCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATCGTC-CAGGT 1407 ||||| ||| ||||| |||||||||||||| |||||| ||| | | || || || Sbjct 600172 AATGGTCTCCTCTGGTGTCATGTTATCTTGAAATAGAGGGGA-TTTGGTACTTCTCAAGT 600114 Query 1408 ATACACGCCATT 1419 ||| ||| |||| Sbjct 600113 ATATACGTCATT 600102 Score = 84.2 bits (92), Expect = 4e-13 Identities = 196/296 (66%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 1603 AATTCTGCATTCTTTAATGCCCAATCTTTTAAAGCAGAATTTTTATCCTCATTCAAGTAC 1662 |||| |||||| | | | ||||| || | || ||||| || |||| | | | Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1663 TCTTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTA 1722 |||||||| || | | |||||||| || | | ||| | || ||| ||| |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1723 ATTTGAATTGGTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAAT 1782 ||||||| ||||||| ||||| | |||||||| || |||| |||| || ||| Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1783 TCTTTAAAGTG------CTTTAGGTAGTGGGGATCTACGTCATCAATGACGTTATACCAA 1836 ||||| | || ||||| ||| |||| || | ||||||||| | |||| Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTATCTGGT 599633 Query 1837 GCATCATTACTGTATACTTTTGGGCTTAGATCAAGGTGTCCGCATAAATAATTATG 1892 |||||||| | ||||| | | | | |||| ||| |||| || |||||||| Sbjct 599632 GCATCATTCTAGAATACTGATTTGTTGAAATCATAGTGACCGCTTATGTAATTATG 599577 >seq2957 Length=4215098 Score = 113 bits (124), Expect = 8e-22 Identities = 166/231 (72%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 1286 AACGCTTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCTTTATGATGTCGTGGTTGGTG 1345 || |||||| | ||||||| |||||| ||||| ||||| | |||||||| | | ||| || Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1346 TTGAATGGCCTCTCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATCGTCC-A 1404 ||||||| ||| ||||| |||||||||||||| || || ||| | | ||| | Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGA-TTTGGTACTTCCTA 1238867 Query 1405 GGTATACACGCCATTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1464 |||||| || |||| | ||| |||| ||| |||| | | | |||||||||||||| Sbjct 1238868 GGTATATACTTCATTGTTGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCAT 1238927 Query 1465 GATTTGCGCAATCTATGCCGAAGTAGTAT-GAGCACCCGCACGTTAGATCA 1514 || | | ||| ||||| ||| | ||| || ||| |||||||| Sbjct 1238928 TGTTCATATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCA 1238978 >seq519 Length=3254320 Score = 113 bits (124), Expect = 8e-22 Identities = 130/174 (75%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 1291 TTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCTTTATGATGTCGTGGTTGGTGTTGAA 1350 |||||| || |||| |||||| ||||| ||||| | |||||||||||||||| |||| || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1351 TGGCCTCTCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATCGTCCAGGTATA 1410 | | ||| |||| |||||||||||||| |||| |||| | ||| | ||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1411 CACGCCATTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1464 || ||||| | ||| |||| |||||| |||||| ||| |||||||||| Sbjct 1741996 TACACCATTGTTGCACTGAG-CCTAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 Score = 98.7 bits (108), Expect = 2e-17 Identities = 239/357 (67%), Gaps = 5/357 (1%) Strand=Plus/Plus Query 2223 ACCTCCCCTTGCAGATCGTCCGTCGATCTGAAATTCTCCCCATTCAATTGTGTCTCCGTC 2282 || |||||| |||||| ||| || || ||||| || |||| || | |||||| || Sbjct 1748953 ACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTC 1749012 Query 2283 CTTGTCGATGTAGGACTTGACG--TCGGAGCTCGATTTAGCTCCCTGAATGTTTGGATGG 2340 ||| || ||||| || || || || || | |||||||| |||| ||||||||| Sbjct 1749013 CTTTTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGG 1749072 Query 2341 AAATGCGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCTGGCATTTGTAT 2400 || || | || || ||| | | |||||| || | | ||| ||| | || Sbjct 1749073 AATTGAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAAT 1749131 Query 2401 TTCCCTTCGAACTGGACAAGCACGTGGAGATGAGGAGACCCATCTTCGTGAAGCTCTCTG 2460 |||||| ||||| || | || || | ||| || || | | ||| || |||||| Sbjct 1749132 TTCCCTGTGAACTAGAGATT-ACATGCAAATGTGGTTCCCGTTGCT-GTGTAGTTCTCTG 1749189 Query 2461 CAGATTTTGATGTATTTTTTATTCGTTGGGGTGTTTAGGTTTTGTAATTGGGAAAGTGCC 2520 || | ||| ||| |||| ||| || ||| ||| ||||||| | || ||| | Sbjct 1749190 CACACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGAACA 1749249 Query 2521 TCTTCTTTAGTAAGGGAGCATTGTGGATAAGTGAGAAAATAATTCTTGGCATTTATT 2577 || ||||| || || | ||| ||| |||||||||||||||| ||| ||||||| Sbjct 1749250 TCATCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATT 1749306 Score = 80.6 bits (88), Expect = 5e-12 Identities = 123/177 (69%), Gaps = 10/177 (6%) Strand=Plus/Plus Query 1688 GATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTACTTAG 1747 ||| ||| | | ||| | |||||| ||||||||||||| || |||||| |||| Sbjct 1742337 GATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAAACTTGC 1742396 Query 1748 TGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTG----------CTTT 1797 || |||||||| || |||| |||| || |||||||| | || |||| Sbjct 1742397 AATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACATCTTT 1742456 Query 1798 AGGTAGTGGGGATCTACGTCATCAATGACGTTATACCAAGCATCATTACTGTATACT 1854 | ||| |||| |||| ||||||||||| ||||| |||||||| | | ||||| Sbjct 1742457 AAGTATGTGGGAGCTACATCATCAATGACATTATATGTTGCATCATTGCAGAATACT 1742513 >seq1129 Length=1508174 Score = 80.6 bits (88), Expect = 5e-12 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1291 TTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCTTTATGATGTCGTGGTTGGTGTTGAA 1350 |||| | | ||||| |||||| ||||||||||||| |||||||||||| ||| ||||||| Sbjct 679757 TTTCATAAAGTTGTAGTTGAACTGTATTTGGATCTCTATGATGTCGTGATTGTTGTTGAA 679698 Query 1351 TGGCCTC 1357 ||| ||| Sbjct 679697 TGGTCTC 679691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8674884949268