Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_009549.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq519 109 1e-20 >seq519 Length=3254320 Score = 109 bits (120), Expect = 1e-20 Identities = 254/369 (69%), Gaps = 18/369 (5%) Strand=Plus/Plus Query 2217 ACCTCCTCTAGCCGATCGTCCATCGATCTGGAAAATTCCATGATCAAGC-ACGT---CTC 2272 || ||| ||||| |||| |||||| || || ||||| ||| |||| | |||| ||| Sbjct 1743138 ACATCCCCTAGCAGATCTTCCATCAATTTG-AAAAT--CATC-TCAATCTACGTAGTCTC 1743193 Query 2273 CGTCTTTTTCCATGTATGATTTAACATCTGATGAGCTTTTAGCTCCCTGAATGTTTGGAT 2332 | || ||||| |||||||||||||||| || | ||||| |||| ||| ||| Sbjct 1743194 CCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGAT 1743253 Query 2333 GGAAATGTGCTGACCTGGTTGGG-GATATGAGATCGAAGAATCTTTGATTTTTACACTGG 2391 |||| || | ||| | ||| ||||| | || || |||| |||||| | || | Sbjct 1743254 GGAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAG 1743312 Query 2392 AATTTCCCTTCGAATTGGATGAGGATATGCAGGTGAGGAGTTCCATCTT--CGTGGAGTT 2449 ||||| ||| ||| ||||| || | ||||| || | ||||| || ||| |||| Sbjct 1743313 AATTTACCTGTGAAGTGGATAAGTACATGCAAATGTG--GTTCCCCGTTGCTGTGTAGTT 1743370 Query 2450 CCCTGCAGATTCTGATGAATAATTTAGAAAT-TGGTGT-TTCTAGGGCTTTAATTTGGGA 2507 | |||| | ||| |||||| |||||| | | | || | ||| ||| | || Sbjct 1743371 CTTTGCACACTCTTATGAAT--TTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATG 1743428 Query 2508 AAGTGCCTCCTCTTTGGTAAGAGAACAGCGTGGATATGTGAGGAAATAGTTTTTGGCATT 2567 ||| || || ||||| || || ||||| | ||| | |||||||||| |||||| ||| Sbjct 1743429 AAGAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATT 1743488 Query 2568 TATTCTGAA 2576 |||||| || Sbjct 1743489 TATTCTAAA 1743497 Score = 80.6 bits (88), Expect = 5e-12 Identities = 341/518 (66%), Gaps = 23/518 (4%) Strand=Plus/Plus Query 2089 AAATTATTATTTAAATTATGGAACTGTAAAACAAAA-TCTTTGGGAGCTTTCTCCCTTAA 2147 |||||| ||| |||||||| | |||| || ||| |||||||| ||||||| ||| Sbjct 1748825 AAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCTTTGGGT-CTTTCTCTTTTAT 1748883 Query 2148 TATATTGAGGGCCGATGCT-TTGGCCCCTGAATTGAGTGCCTCGGCATATGCGTCGTTGG 2206 ||| | | || | || |||| | | |||| | || || || ||| | || || Sbjct 1748884 TATTTGTAATGCTGCATCTCTTGGTGCAT-AATTAATCGCTTCAGCGTATACATC--TGC 1748940 Query 2207 CAG-ATTGGCA-ACCTCCTCTAGCCGATCGTCCATCGATCTGGAAA--ATTCCATGATCA 2262 | ||| | || ||| ||| | |||| |||||| || || ||| || ||| ||| Sbjct 1748941 AACTATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCA--ATCT 1748998 Query 2263 AGCACGTCTCCGTCTTTTTCCATGTATGATTTAA--CATCTGATGAGCTTTTAGCTCCCT 2320 | |||||| || ||||| ||||||||||||| |||| | | |||||| | Sbjct 1748999 ACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATT 1749058 Query 2321 GAATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGATATGAGATCGAAGAATCTTTGAT 2380 ||| ||||||||||| || | || || ||| | | ||||| || | ||||| Sbjct 1749059 GAACATTTGGATGGAATTGAATGGTTCT-ATTAGGGTTTGTATGTCGAAAAACCATTGAT 1749117 Query 2381 TTTTACACTGGAATTTCCCTTCGAATTGGATGAGGATATGCAGGTGAGGAGTTCCATCTT 2440 | | || |||||||||| ||| | || || | ||||| || | ||||| | Sbjct 1749118 TGGTGCAGCAGAATTTCCCTGTGAACTAGA-GATTACATGCAAATGTG--GTTCCCGTTG 1749174 Query 2441 C-GTGGAGTTCCCTGCAGATTCTGATGAATAATTTAGAAAT-TGGTGT-TTCTAGGGCTT 2497 | ||| ||||| ||||| | | | |||||| || ||| | | | || | ||| || Sbjct 1749175 CTGTGTAGTTCTCTGCACACTTTTATGAAT--TTAAGATTTGTAGGGTAGTTGAGGTTTT 1749232 Query 2498 TAATTTGGGAAAGTGCCTCCTCTTTGGTAAGAGAACAGCGTGGATATGTGAGGAAATAGT 2557 | | || ||| | || ||||| || || |||| | ||| | ||||| ||||| | Sbjct 1749233 TGAGATGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAAT 1749292 Query 2558 TTTTGGCATTTATTCTGAATTTATTAGGAGGAGGCATT 2595 ||||| ||||||||| || | ||| |||| |||| Sbjct 1749293 TTTTGCTATTTATTCTAAACATGTTATTGGGAGCCATT 1749330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8694084251996