Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_009550.1 Length=2740 Score E Sequences producing significant alignments: (Bits) Value seq519 87.8 3e-14 seq1694 77.0 6e-11 >seq519 Length=3254320 Score = 87.8 bits (96), Expect = 3e-14 Identities = 253/382 (66%), Gaps = 7/382 (2%) Strand=Plus/Plus Query 2213 ACCTCCTCTAGCACTTCTTCCGTCGATCTGGAATTCTCCCCAGTCGAGGGTGTCTCCATC 2272 || ||| ||| || |||||| || || || || || |||| || | |||||| || Sbjct 1748953 ACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTC 1749012 Query 2273 CTTCTCCATATAGGACTTGACG--TCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGG 2330 ||| || || || || || || || || | |||||||| |||| || |||||| Sbjct 1749013 CTTTTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGG 1749072 Query 2331 AAATGTGCTGACCTGGTTGGGGATACCAGATCGAAGAATCGGTTATTCGTGCAGACGAAT 2390 || || | || || ||| | | ||||| || | | ||| |||||| |||| Sbjct 1749073 AATTGAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAAT 1749131 Query 2391 TTCCCTTCGAATTGCACGAGCACATGGAGATGAGGGCTCCCATCTTCGTGTAGTTCTCTA 2450 |||||| ||| | | || ||||| | ||| || |||| | |||||||||||| Sbjct 1749132 TTCCCTGTGAACTAGA-GATTACATGCAAATGTGGT-TCCCGTTGCTGTGTAGTTCTCTG 1749189 Query 2451 CAGATTTTAATGAATTTTTTATTTGTTGGGGTTTCGATATTCTGTAATTGGGAAAGAGCT 2510 || | ||| |||||||| |||||| ||| | || || | | || |||| | Sbjct 1749190 CACACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGAACA 1749249 Query 2511 TCTTCTTTTGTTAGAGAGCAATGTGGATATGTAAGGAAATAATTTCTGGCTTGTATTTTA 2570 || |||||||| || | || ||| | || || ||||||||| || | |||| || Sbjct 1749250 TCATCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATTCTA 1749309 Query 2571 AA-ACGTTTTGGGGGAGCCATT 2591 || | ||| | |||||||||| Sbjct 1749310 AACATGTTAT-TGGGAGCCATT 1749330 >seq1694 Length=789422 Score = 77.0 bits (84), Expect = 6e-11 Identities = 109/151 (72%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 1637 CTCTTCGTCTAGGTACTCTTTATATGATG-ACGTTGGGCCTGGATTGCAGAGGAAGATTG 1695 |||||| || || | |||||||| || | || || |||||||| || | | ||||| Sbjct 599828 CTCTTCATCCGGGAAATCTTTATAGGACGCACCTTCA-CCTGGATTACACAATACGATTG 599770 Query 1696 TTGGGATGCCACCTTTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCC 1755 || |||| ||| ||||||||||| | ||||| ||||| | |||||||| || Sbjct 599769 ATGAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTT 599710 Query 1756 TTTGGGCCCCCATGAATTCTTTAAAGTGCTT 1786 |||| |||| || |||||||| | ||||| Sbjct 599709 TTTGCACCCCAATAAATTCTTTCTATTGCTT 599679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8658885530328