Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_009553.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq3069 120 5e-24 seq1129 120 5e-24 seq2957 113 8e-22 seq1694 111 3e-21 seq519 105 1e-19 >seq3069 Length=10854949 Score = 120 bits (132), Expect = 5e-24 Identities = 243/358 (68%), Gaps = 2/358 (1%) Strand=Plus/Plus Query 1154 ATTACATTGTTAATACTAATTACACCCAAATTATCTAAATATTTCATACATTGAACCCTA 1213 || ||||| || | |||||| || || | | ||||||||||| || |||| | Sbjct 3754264 ATAACATTATTTAAACTAATGACTCCAATACATTCTAAATATTTATTAACATGAAAAGCA 3754323 Query 1214 AATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTCCAGATCTGGAAGATTAGA 1273 | | | | ||| | ||||| |||| ||| |||||||||| ||| | || Sbjct 3754324 AGTCGTTCTCTGAATTGAGAAGTCGAAGGTGTTAATGTCGTCCAGATCTTGAAAAATATC 3754383 Query 1274 AAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTTGAACTGTATTTGGATCTGT 1333 | || || | | ||| |||||||| |||||| |||||| ||||| ||||||| | Sbjct 3754384 CATGCCTTCTGAAATTTCAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCT 3754443 Query 1334 ATGATGTCCTGATTGGTGTTGAATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATAGAGG 1393 |||||||| || | | |||| ||||||||| ||||| |||| ||||||||| ||| Sbjct 3754444 ATGATGTCGTGGTCGTTGTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGG 3754503 Query 1394 GGATTTCTGATCGTC-CAAGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTC 1452 |||||| | | || ||| |||| ||| || | | ||| | || | |||||| || Sbjct 3754504 GGATTT-GGTACTTCTCAAATATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTT 3754562 Query 1453 CCCTGTGCGTGAATCCATGATTTGCGCAGTCTATGCCTAAGTAATATGAGCACCCGCA 1510 ||| ||||| ||| ||| || ||| | ||| || ||| |||| ||| || || Sbjct 3754563 CCCAGTGCGAAAATACATTGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACA 3754620 >seq1129 Length=1508174 Score = 120 bits (132), Expect = 5e-24 Identities = 154/209 (74%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 1297 TTTCCTCAGGTTGTGGTTGAACTGTATTTGGATCTGTATGATGTCCTGATTGGTGTTGAA 1356 |||||| | ||||| |||||||||||| ||||||| |||||||| || || ||||||| Sbjct 693775 TTTCCTAAAGTTGTAGTTGAACTGTATCTGGATCTCTATGATGTTGTGGATGTTGTTGAA 693716 Query 1357 TGGTCTCTCGTGGTGCTTGGTTATCTTGAAATAGAGGGGATTTCTGATCGT-CCAAGTAT 1415 |||||| ||||| | ||||||||| ||||| ||| ||| | | | | |||||||| Sbjct 693715 CGGTCTCCTCTGGTGTTGTGTTATCTTGTAATAGGGGGAATT--TAAACTTCCCAAGTAT 693658 Query 1416 ACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGTGAATCCATGATTT 1475 | |||||| | | || | ||| ||| |||| ||| ||| || || ||||||| || Sbjct 693657 ATACGCCATTATTTCACTAAGTCGCAATGAGATATT-CCCGGTACGAAAATCCATCGTTC 693599 Query 1476 GCGCAGTCTATGCCTAAGTAATATGAGCA 1504 | ||| ||| | |||||||| ||| Sbjct 693598 ATGTAGTTAATGTGTTGGTAATATGTGCA 693570 Score = 89.7 bits (98), Expect = 9e-15 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1297 TTTCCTCAGGTTGTGGTTGAACTGTATTTGGATCTGTATGATGTCCTGATTGGTGTTGAA 1356 |||| | | ||||| |||||||||||||||||||| ||||||||| |||||| ||||||| Sbjct 679757 TTTCATAAAGTTGTAGTTGAACTGTATTTGGATCTCTATGATGTCGTGATTGTTGTTGAA 679698 Query 1357 TGGTCTC 1363 ||||||| Sbjct 679697 TGGTCTC 679691 >seq2957 Length=4215098 Score = 113 bits (124), Expect = 8e-22 Identities = 166/231 (72%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 1292 AACGCTTTCCTCAGGTTGTGGTTGAACTGTATTTGGATCTGTATGATGTCCTGATTGGTG 1351 || |||||| | ||||||| |||||||||||| ||||| | |||||||| | ||| || Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1352 TTGAATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATAGAGGGGATTTCTGATCGTCC-A 1410 ||||||| |||| ||||| ||||||||||||||| || ||||| | | ||| | Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTT-GGTACTTCCTA 1238867 Query 1411 AGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGTGAATCCAT 1470 ||||| || || | | ||| |||| ||| |||| | | | ||||| ||||||| Sbjct 1238868 GGTATATACTTCATTGTTGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCAT 1238927 Query 1471 GATTTGCGCAGTCTATGCCTAAGTAATAT-GAGCACCCGCACGTTAGATCA 1520 || ||| ||| ||||||||| | ||| || ||| |||||||| Sbjct 1238928 TGTTCATATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCA 1238978 >seq1694 Length=789422 Score = 111 bits (122), Expect = 3e-21 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 1307 TTGTGGTTGAACTGTATTTGGATCTGTATGATGTCCTGATTGGTGTTGAATGGTCTCTCG 1366 |||| |||||||||||||||||||| ||| ||||| || ||| ||||||||||| || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1367 TGGTGCTTGGTTATCTTGAAATAGAGGGGATTTCTGATCGTCCAAGTATACACGCCACTC 1426 | ||| ||||||||||||||||| ||||| | ||||| ||| |||||| | Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1427 TCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGTGAATCCAT 1470 | ||| ||| ||||||| |||||| |||| ||||||| Sbjct 596521 TTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT 596478 Score = 105 bits (116), Expect = 1e-19 Identities = 103/130 (79%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 1295 GCTTTCCTCAGGTTGTGGTTGAACTGTATTTGGATCTGTATGATGTCCTGATTGGTGTTG 1354 |||||||| | || || |||||||| ||| | ||||| ||||||||| | ||| ||||| Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1355 AATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATAGAGGGGATTTCTGATCGTC-CAAGT 1413 ||||||||| ||||| |||||||||||||||||||||||| | | || ||||| Sbjct 600172 AATGGTCTCCTCTGGTGTCATGTTATCTTGAAATAGAGGGGATTT-GGTACTTCTCAAGT 600114 Query 1414 ATACACGCCA 1423 ||| ||| || Sbjct 600113 ATATACGTCA 600104 >seq519 Length=3254320 Score = 105 bits (116), Expect = 1e-19 Identities = 159/225 (71%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 1297 TTTCCTCAGGTTGTGGTTGAACTGTATTTGGATCTGTATGATGTCCTGATTGGTGTTGAA 1356 |||||| || |||| |||||| ||||| ||||| | ||||||||| || ||| |||| || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1357 TGGTCTCTCGTGGTGCTTGGTTATCTTGAAATAGAGGGGATTTCTGATCGTCCAAGTATA 1416 | ||||| |||| ||||||||||||||||||| |||| | ||||| ||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1417 CACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGTGAATCCATGATTTG 1476 || ||| | | ||| |||| |||||| |||||| ||| | ||||||| || Sbjct 1741996 TACACCATTGTTGCACTGAG-CCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTCC 1742054 Query 1477 CGCAGTCTATGCCTAAGTAATATGAGCACCCGCACGTTAGATCAA 1521 |||| ||| | ||||||| ||| || || || ||||| Sbjct 1742055 TACAGTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAA 1742099 Score = 98.7 bits (108), Expect = 2e-17 Identities = 331/503 (66%), Gaps = 18/503 (4%) Strand=Plus/Plus Query 2089 AAAATCCTATCTAAATTAGAATTTAAATTATGAAACTGTAAAACAAAA-TCTTTAGGAGC 2147 ||||| | | | ||||| ||||| ||||||||| | |||| | ||| ||||| || | Sbjct 1742998 AAAATTCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAACTCTTTGGGT-C 1743056 Query 2148 CTTCTCCTTTAATATATTGAGGGCCGCTGCTTTGGACCCTGAATTGATTGCCTCGGCATA 2207 ||||| |||| ||| | | | | || | |||| ||||| || || | | || Sbjct 1743057 ATTCTCTTTTATTATTTGTAATGTTGAATCTCTTGACCTAGAATTAATCGCTTTAGTGTA 1743116 Query 2208 TGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGATCTGGAAAACTCC 2267 | | || | ||| || ||| ||||| ||||||||||| || || ||| | | Sbjct 1743117 TACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATC 1743176 Query 2268 ATGATCAAGCACGTCTCCGTCTTTTTCCATGTATGCTTTAACAT---CTGTTGAGCTTTT 2324 ||| | |||||| || ||||| ||||||| |||||||| ||||| ||| Sbjct 1743177 TCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGA---TTT 1743233 Query 2325 AGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGG-GATGTGAGATCGAAGA 2383 || |||| || ||||||| || | ||| | ||| ||| | | || || | Sbjct 1743234 AGAAAATTGAACATTTTGATGGAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAA 1743292 Query 2384 ATCTGTTGTTTTG-GCATTTGAATTTGCCTTCGAACTGGATGAGGACATGCAGGTGAGGA 2442 ||| ||| || | ||| |||||| ||| ||| ||||| || ||||||| || || Sbjct 1743293 ATC-ATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGT 1743351 Query 2443 GACCCATCTTCGTGTAGTTCCCTGCAAATACGTATGAATAATTTATTAGTCGGTGTTGAT 2502 ||| | ||||||||| |||| | | ||||||| | ||| || || || | | Sbjct 1743352 TCCCCGTTGCTGTGTAGTTCTTTGCACACTCTTATGAATTTTAGATTTGTAGG-GTAGTT 1743410 Query 2503 AGGGC---TGAGATTTGGGAAAGTGCCTCTTCTTTAGTAAGGGAGCACTGTGGATAAGTG 2559 ||| ||||| || ||| || || ||||| || ||||| || ||| ||||| Sbjct 1743411 GAGGCTTTTGAGA--TGATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTG 1743468 Query 2560 AGGAAATAATTCTTGGCATTTAT 2582 ||||||| ||| ||| |||||| Sbjct 1743469 AGGAAATGATTTTTGCTATTTAT 1743491 Score = 80.6 bits (88), Expect = 5e-12 Identities = 359/546 (66%), Gaps = 27/546 (5%) Strand=Plus/Plus Query 2077 ATTGGAGGAGTAAAAATCCTATCTAAATTAGAATTTAAATTATGAAACTGTA-AAACAAA 2135 ||| |||| | || || | | | ||||||||||| ||||||||| | |||| || ||| Sbjct 1748801 ATTAGAGGGGCGAATATTCGACCCAAATTAGAATTGAAATTATGATATTGTAGAATGAAA 1748860 Query 2136 ATCTTTAGGAGCCTTCTCCTTTAATATATTGAGGGCCGCTGCT-TTGGACCCTGAATTGA 2194 ||||| || | ||||| |||| ||| | | || || || |||| | | |||| | Sbjct 1748861 CTCTTT-GGGTCTTTCTCTTTTATTATTTGTAATGCTGCATCTCTTGGTGCAT-AATTAA 1748918 Query 2195 TTGCCTCGGCATATGCGTCGTTGGCA-GATTGGC-AACCTCCTCTAGCTGATCTTCCATC 2252 | || || || ||| | || || | ||| | || ||| ||| | ||||||||||| Sbjct 1748919 TCGCTTCAGCGTATACATC--TGCAACTATTTTCTTACATCCCCTAACAGATCTTCCATC 1748976 Query 2253 GATCTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTTTCCATGTATGCTTTAA--CA 2310 || || ||| | | ||| | |||||| || ||||| ||||||| ||||| || Sbjct 1748977 AATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCA 1749036 Query 2311 TC---TGTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGG 2367 || ||||| |||||| |||| || |||||||| || | || | ||| Sbjct 1749037 TCAAAGGTTGA---TTTAGCATATTGAACATTTGGATGGAATTGAATGGTTCTATTAGGG 1749093 Query 2368 GATGTGAGATCGAAGAATCTGTTGTTTTG-GCATTTGAATTTGCCTTCGAACTGGATGAG 2426 ||| | ||||| || | ||| || | ||| |||||| ||| ||||| || || Sbjct 1749094 TTTGT-ATGTCGAA-AAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAACTAGA-GAT 1749150 Query 2427 GACATGCAGGTGAGGAGACCCATCTTCGTGTAGTTCCCTGCAAATACGTATGAATAATTT 2486 ||||||| || || ||| | ||||||||| ||||| | ||||||| Sbjct 1749151 TACATGCAAATGTGG-TTCCCGTTGCTGTGTAGTTCTCTGCACACTTTTATGAATTTAAG 1749209 Query 2487 ATTAGTCGGTGTTGAT-AGGGCTGAGATTTGGGAAAGTGCCTCTTCTTTAGTAAGGGAGC 2545 ||| || || || | | ||| | || || ||| | || ||||| || || | | Sbjct 1749210 ATTTGTAGG-GTAGTTGAGGTTTTTGAGATGACGAAGAACATCATCTTTTGTGAGTAAAC 1749268 Query 2546 ACTGTGGATAAGTGAGGAAATAATTCTTGGCATTTAT--AAAAAAtttttttGGTTGAGG 2603 | ||| ||||||| |||||||| ||| |||||| ||| || || |||| ||| Sbjct 1749269 ATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATTCTAAACATGTTATTGG--GAGC 1749326 Query 2604 CATATT 2609 ||| || Sbjct 1749327 CATTTT 1749332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8697284135784