Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_009606.1 Length=2611 Score E Sequences producing significant alignments: (Bits) Value seq1129 150 3e-33 seq1694 131 3e-27 seq519 129 1e-26 >seq1129 Length=1508174 Score = 150 bits (166), Expect = 3e-33 Identities = 262/379 (69%), Gaps = 4/379 (1%) Strand=Plus/Minus Query 1478 TGCATTCTTGAGTGTCCAATTTTTGAGTGATGTGTTTTCTTCTTTGTTTAGGTAATCTTT 1537 |||||| | ||| ||| |||| ||||| | ||||| ||||| | |||| ||||||| Sbjct 679449 TGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTT 679390 Query 1538 ATAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCACCTTTAATTTG 1597 ||||| ||||| ||||| ||||| || | | ||||||||||| |||||||||| | Sbjct 679389 ATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAG 679330 Query 1598 AACTGGCTTGCCATACTTGCAATTTGACTGCCAGTCTTTCTGGGCCCCCAGAAGTTCTTT 1657 ||| || || |||||||||||||| ||||| ||||| | | |||| | | ||||| Sbjct 679329 AACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTT-TTGCCCCCAATCAAATCTTT 679271 Query 1658 CCAGTGCTTTAGCTTTAGATATTGCGGTGTGACGTCGTCAATGACGTTATACTCCACTTC 1717 | | ||||| | ||||| || || || || || || ||||| ||||| | || Sbjct 679270 CTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATATGTTGCATC 679211 Query 1718 ATTAGAGAACACTCTGGAATTGAAGTC---GAGATGTCCACTGAGATAATTATGTGGGCC 1774 ||| ||| ||| ||||| || | |||| || | | |||||||| || | Sbjct 679210 ATTGTGGAATACTGATTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATGACGGTC 679151 Query 1775 TAATGCCCGAGCCCACATCGTCTTCCCTGTCCTAGAATCACCTTCTATGATAATACTAAT 1834 | || || ||| | | || || ||| | | | ||||| ||||| ||||| | Sbjct 679150 GAGTGAGCGGGCCAAAGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATTATACTTTT 679091 Query 1835 AGGTCTCTCTGGCCGCGCA 1853 |||||| ||||||| |||| Sbjct 679090 AGGTCTATCTGGCCACGCA 679072 >seq1694 Length=789422 Score = 131 bits (144), Expect = 3e-27 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 1478 TGCATTCTTGAGTGTCCAATTTTTGAGTGATGTGTTTTCTTCTTTGTTTAGGTAATCTTT 1537 |||||| | ||| |||||||| ||||| | ||||| |||| | || ||||||| Sbjct 599867 TGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTT 599808 Query 1538 ATAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCACCTTTAATTTG 1597 |||| ||||| ||||| ||||| || | |||||||||| ||| ||| ||||||||| Sbjct 599807 ATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTG 599748 Query 1598 AACTGGCTTGCCATACTTGCAATTTGACTGCCAGTCTTTCTGGGCCCCCAGAAGTTCTTT 1657 ||| | || ||||||||||||| ||||| ||||| || |||| | || |||||| Sbjct 599747 AACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTT 599688 Query 1658 CCAGTGCTTTAGCTTTA 1674 | | ||||| | ||||| Sbjct 599687 CTATTGCTTCATCTTTA 599671 Score = 102 bits (112), Expect = 1e-18 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 1478 TGCATTCTTGAGTGTCCAATTTTTGAGTGATGTGTTTTCTTCTTTGTTTAGGTAATCTTT 1537 ||||| | ||||| |||||| || || | ||||| ||||| | | | ||||| | Sbjct 596271 TGCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAAATCTCT 596212 Query 1538 ATAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCACCTTTAATTTG 1597 ||| ||||| |||| ||||||| | |||||||||||||| ||||||||||||| Sbjct 596211 GTAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTTAATTTT 596152 Query 1598 AACTGGCTTGCCATACTTGCAATT 1621 ||| || || |||||||||||||| Sbjct 596151 AACGGGTTTCCCATACTTGCAATT 596128 >seq519 Length=3254320 Score = 129 bits (142), Expect = 1e-26 Identities = 169/234 (72%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1479 GCATTCTTGAGTGTCCAATTTTTGAGTGATGTGTTTTCTTCTTTGTTTAGGTAATCTTTA 1538 ||||| | || ||||||| ||||| | | ||||| || || | |||| |||||||| Sbjct 1742258 GCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTA 1742317 Query 1539 TAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCACCTTTAATTTGA 1598 ||| |||||||||| ||| ||| | |||||||||||||| ||||||||||||| | Sbjct 1742318 TAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAA 1742377 Query 1599 ACTGGCTTGCCATACTTGCAATTTGACTGCCAGTCTTTCTGGGCCCCCAGAAGTTCTTTC 1658 || | || | | |||||||||| ||||| ||||| || |||| | | ||||||| Sbjct 1742378 ACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTC 1742437 Query 1659 CAGTG----CTTTAGCTTTAGATATTGCGGTGTGACGTCGTCAATGACGTTATA 1708 || || || | ||||| ||| || | || || |||||||| ||||| Sbjct 1742438 CAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATA 1742491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8246100521676