Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_009607.1 Length=2593 Score E Sequences producing significant alignments: (Bits) Value seq519 127 3e-26 seq1694 107 3e-20 >seq519 Length=3254320 Score = 127 bits (140), Expect = 3e-26 Identities = 166/224 (74%), Gaps = 8/224 (4%) Strand=Plus/Plus Query 1467 TCCAATTATTTAGACTTGCATTTTCTTCTTTGTCGAGGAAACATTTATAGCTGGCCCCCT 1526 ||||||| || ||| | ||||||| || || || |||||| ||||||| || |||| Sbjct 1742271 TCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCT 1742330 Query 1527 CGCCAGGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACTGGCTTTCCG- 1585 | | ||| ||| | ||||| ||||||| ||||||||||||| ||| | |||||| Sbjct 1742331 CACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAAAC-GAGTTTCCGA 1742389 Query 1586 TATTTGCAGTTTGATTGCCAATCCTTTTGGGCCCCAAGCAATTCTTTCCAGTG----CTT 1641 | ||||| || ||||||||| ||||| |||||| |||||||||||| || || Sbjct 1742390 AACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTA 1742449 Query 1642 TAACTTTAGATA-GTGCGGTGCGATGTCATCAATGACGTTATAT 1684 | ||||| || ||| || || | ||||||||||| |||||| Sbjct 1742450 CATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTATAT 1742492 Score = 78.8 bits (86), Expect = 2e-11 Identities = 122/165 (74%), Gaps = 7/165 (4%) Strand=Plus/Plus Query 1228 TTATCTTGAAATAGAGGGGATTTGATATCTCCCAAATATAAACGCCATTCTCTGC-CTGA 1286 |||||||||||||||||| ||||| || |||||| ||| || ||||| | ||| |||| Sbjct 1741956 TTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATATACACCATTGT-TGCACTGA 1742014 Query 1287 CGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCAT-GTCCTCTGCAGTCGATGTGTACGT 1345 | ||||| ||||||| ||| | ||||||| || | || |||| |||||| || Sbjct 1742015 -GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTC-CTACAGTTAATGTGTTGGT 1742072 Query 1346 AA-ATAGAGCACCCGCACTCTATATCAATTCGTCGTCTCCTGATT 1389 || ||| ||| || || | ||||||||| || | |||| ||| Sbjct 1742073 AATATA-TGCAACCACAGTATATATCAATGCGCTTTTTCCTAATT 1742116 >seq1694 Length=789422 Score = 107 bits (118), Expect = 3e-20 Identities = 167/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 1448 AATTTCGCATTGTGCTTTGTCCAATTATTTAGACTTGCATTTTCTTCTTTGTCGAGGAAA 1507 |||| ||||| || |||||||| || || ||||||| |||| || ||||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1508 CATTTATAGCTGGCCCCCTCGCCAGGATTGCAAAGCACGATGCATGGGATACCACCTTTA 1567 ||||||| || || || || ||||| || | ||||| ||| ||| ||| |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1568 ATTTGAACTGGCTTTCCGTATTTGCAGTTTGATTGCCAATCCTTTTGGGCCCCAAGCAAT 1627 |||||||| | || || || ||||| | ||||||||| ||||| |||||| ||| Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1628 TCTTTCCAGTGCTTTAACTTT-AGATAGTGCGGTGCGATGTCATCAATGACGTTAT 1682 |||||| | ||||| | |||| || |||| || || ||||||||| | |||| Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTG-GGAGCTGCATCATCAATGTCATTAT 599638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8188502613492