Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_010238.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value seq519 91.5 3e-15 seq1694 78.8 2e-11 seq1129 77.0 6e-11 >seq519 Length=3254320 Score = 91.5 bits (100), Expect = 3e-15 Identities = 257/381 (67%), Gaps = 13/381 (3%) Strand=Plus/Plus Query 2237 CCTCTAGCAGATCGTCCGTCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTC 2296 || ||| |||||| ||| || || ||||| || |||| || | |||||| ||||| Sbjct 1748957 CCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTT 1749016 Query 2297 TCCATATAGGACTTGAC--ATCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAAT 2354 || || || || || || ||| || |||||||||| |||| || |||||||| | Sbjct 1749017 TCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATT 1749076 Query 2355 GTGCTGACCTGGTTGGGGATACGAGGTCGAAGAATCTGTTATTTTTGCACTTGTATTTGC 2414 | | || || ||| | | |||||| || | | ||| |||| | |||| | Sbjct 1749077 GAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCC 1749135 Query 2415 CTTCGAACTGGATGAGCACGCGAAGATGAGGTTCCCCATTTTCATGAAGCTCTCTGCAGA 2474 || ||||| || || || | | ||| ||||||| | | || || |||||||| | Sbjct 1749136 CTGTGAACTAGA-GATTACATGCAAATGTGGTTCCCGTTGCTG-TGTAGTTCTCTGCACA 1749193 Query 2475 TTTTAATGTATTTTTTGTTTACTGGGGT--TTGTAGGTTTTGTAGTTGGGAAAGTGCTTC 2532 ||| ||| |||| ||| | |||| ||| ||||||| || || ||| | || Sbjct 1749194 CTTTTATGAATTTAAGATTTG-TAGGGTAGTTG-AGGTTTTTGAGATGACGAAGAACATC 1749251 Query 2533 CTCTTTAGTAAGGGAGCAT-TTGGGATAAGTAAGGAAATAATTTTTGGCATATA-TCTGA 2590 ||||| || || | ||| |||||| |||| || |||||||||||| || || ||| | Sbjct 1749252 ATCTTTTGTGAGTAAACATCTTGGGA-AAGTGAGAAAATAATTTTTGCTATTTATTCTAA 1749310 Query 2591 AATTGTTTGGGAGGAGCCATT 2611 | |||| | ||||||||| Sbjct 1749311 ACATGTTATTG-GGAGCCATT 1749330 Score = 82.4 bits (90), Expect = 1e-12 Identities = 128/177 (72%), Gaps = 7/177 (4%) Strand=Plus/Plus Query 1304 TTTCCTCAGGTTGTAGTTGAACTGTATTTGGACTTTGATTATGTCTTCTTTCATTGTGAA 1363 |||||| || ||||||||||| ||||| |||| || || ||||| | || | | || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1364 TGGACGGTTGTGGTGTTCTGTTATCTTGAAATACAGGGGATTTTGAATCTCCCA--GATA 1421 | | | | |||| | ||||||||||||||| |||| |||| | | ||||| |||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1422 AACACGCCATTCTCTGC-TTGAGCTGCAGTGATGAGTTCCCCGGTGCGTGAATCCAT 1477 ||| ||||| | ||| ||||| ||||| ||||||||||| | ||||||| Sbjct 1741996 TACA--CCATTGT-TGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 >seq1694 Length=789422 Score = 78.8 bits (86), Expect = 2e-11 Identities = 118/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 1314 TTGTAGTTGAACTGTATTTGGACTTTGATTATGTCTTCTTTCATTGTGAATGGACGGTTG 1373 |||||||||||||||||||||| | || ||||| | || | ||||||| | Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1374 TGGTGTTCTGTTATCTTGAAATACAGGGGATTTTGAATCTCCCAGATAAACACGCCATTC 1433 | |||| ||||||||||||||| || ||||| | | ||||| | | |||||||| Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1434 TCTGC-TTGAGCTGCAGTGATGAGTTCCCCGGTGCGTGAATCCAT 1477 | ||| |||| |||||| ||||||| |||| ||||||| Sbjct 596521 T-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT 596478 >seq1129 Length=1508174 Score = 77.0 bits (84), Expect = 6e-11 Identities = 123/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 1304 TTTCCTCAGGTTGTAGTTGAACTGTATTTGGACTTTGATTATGTCTTCTTTCATTGTGAA 1363 |||||| | |||||||||||||||||| |||| | || |||| | | | |||| Sbjct 693775 TTTCCTAAAGTTGTAGTTGAACTGTATCTGGATCTCTATGATGTTGTGGATGTTGTTGAA 693716 Query 1364 TGGACGGTTGTGGTGTTCTGTTATCTTGAAATACAGGGGATTTTGAATCTCCCAGATAAA 1423 || | | ||||||| |||||||||| |||| ||||| ||| || ||||| || | Sbjct 693715 CGGTCTCCTCTGGTGTTGTGTTATCTTGTAATA-GGGGGAATTTAAACTTCCCAAGTATA 693657 Query 1424 CACGCCATTCTCTGCTTGAGCTGCAGTGATGAGTTCCCCGGTGCGTGAATCCAT 1477 |||||||| | | | || ||| ||| || | |||||| || ||||||| Sbjct 693656 TACGCCATTATTTCACTAAGTCGCAATGA-GATATTCCCGGTACGAAAATCCAT 693604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8710083670936