Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_010307.1 Length=2725 Score E Sequences producing significant alignments: (Bits) Value seq3069 109 9e-21 seq1694 87.8 3e-14 seq519 87.8 3e-14 >seq3069 Length=10854949 Score = 109 bits (120), Expect = 9e-21 Identities = 185/263 (70%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 1256 CTTGTGAATTCCCAATGCTTTCCTCAGGTTGTAGTTGAATTGGATCCTTATCTCTATTTC 1315 ||| |||| | ||| |||||||| |||||| |||||||||| ||| |||||||| Sbjct 3754389 CTTCTGAAATTTCAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGAT 3754448 Query 1316 GTCCCTGTTCGT-GTTGAATGGTCTGTTGAGGTGTTTTAGGATCTTGAAATATAGGGGAT 1374 ||| || |||| ||| |||||||| | ||||| | | ||||||||||||||||| Sbjct 3754449 GTCG-TGGTCGTTGTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGAT 3754507 Query 1375 TTGGCACCTCCCAGATATATACGCCATTCGTCGC-TTGAGCTGCAGTGATGGGTTCCCCG 1433 |||| || || || ||||||||| |||| || || | ||| | ||||| || ||| Sbjct 3754508 TTGGTACTTCTCAAATATATACGTCATT-GTTGCACTAAGCCGTAGTGAGATTTTTCCCA 3754566 Query 1434 GTGTGTGAATCCATGATTGTGGCAGTTGATTGATTTGTAAATTGAACACCCACAAGGGAG 1493 ||| | ||| ||| || | ||| || || || ||| || || ||||| | Sbjct 3754567 GTGCGAAAATACATTGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACATTATAT 3754626 Query 1494 GTCAATTCTCTTTCTTCTAATTG 1516 | || | |||||| ||||||| Sbjct 3754627 ATAAACACGCTTTCTCCTAATTG 3754649 >seq1694 Length=789422 Score = 87.8 bits (96), Expect = 3e-14 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 1272 GCTTTCCTCAGGTTGTAGTTGAATTGGATCCTTATCTCTATTTCGTCCCTGTTCGTGTTG 1331 |||||||| | || ||||||||| | ||| |||||||| ||| ||| ||||| Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1332 AATGGTCTGTTGAGGTGTTTTAGGATCTTGAAATATAGGGGATTTGGCACCTCCCAGATA 1391 |||||||| | ||||| | ||||||||||| ||||||||||| || || || || Sbjct 600172 AATGGTCTCCTCTGGTGTCATGTTATCTTGAAATAGAGGGGATTTGGTACTTCTCAAGTA 600113 Query 1392 TATACGCCATT 1402 |||||| |||| Sbjct 600112 TATACGTCATT 600102 Score = 77.0 bits (84), Expect = 6e-11 Identities = 142/206 (69%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 1284 TTGTAGTTGAATTGGATCCTTATCTCTATTTCGTCCCTGTTCGTGTTGAATGGTCTGTTG 1343 ||||||||||| || || |||||||| ||| ||| ||||||||||| | | Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1344 AGGTGTTTTAGGATCTTGAAATATAGGGGATTTGGCACCTCCCAGATATATACGCCATTC 1403 |||| | ||||||||||| || ||||||| || ||||| |||||||||||| Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATT- 596523 Query 1404 GTCGC-TTGAGCTGCAGTGATGGGTTCCCCGGTGTGTGAATCCATGATTGTGGCAGTTGA 1462 || || |||| |||||| ||||||| ||| ||||||| || ||| || | Sbjct 596522 GTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATTAA 596463 Query 1463 TTGATTTGTAAATTGAACACCCACAA 1488 | || |||| || || |||||| Sbjct 596462 TATGTTGGTAATATGTGCAACCACAA 596437 >seq519 Length=3254320 Score = 87.8 bits (96), Expect = 3e-14 Identities = 168/244 (69%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 1274 TTTCCTCAGGTTGTAGTTGAATTGGATCCTTATCTCTATTTCGTCCCTGTTCGTGTTGAA 1333 |||||| || ||||||||||| || ||| || ||||| ||| ||| |||| || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1334 TGGTCTGTTGAGGTGTTTTAGGATCTTGAAATATAGGGGATTTGGCACCTCCCAGATATA 1393 | |||| | ||| | | ||||||||||| |||| |||||| | ||||| ||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1394 TACGCCATTCGTCGC-TTGAGCTGCAGTGATGGGTTCCCCGGTGTGTGAATCCATGATTG 1452 ||| ||||| || || ||||| ||||| ||||||||||||| ||||||| || Sbjct 1741996 TACACCATT-GTTGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTC 1742053 Query 1453 TGGCAGTTGATTGATTTGTAAATTGAACACCCACAAGGGAGGTCAATTCTCTTTCTTCTA 1512 ||||| || || |||| | || ||||| | ||||| | |||| | ||| Sbjct 1742054 CTACAGTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAATGCGCTTTTTCCTA 1742113 Query 1513 ATTG 1516 |||| Sbjct 1742114 ATTG 1742117 Score = 77.0 bits (84), Expect = 6e-11 Identities = 243/362 (67%), Gaps = 20/362 (6%) Strand=Plus/Plus Query 2210 TCCTCTAGCCGATCTTCCATCGATCTGGAAAG-ATC-CATGATCAA-GTACATCTCCGTC 2266 ||| ||||| ||||||||||| || || ||| ||| || ||| | ||| ||||| || Sbjct 1743141 TCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCA--ATCTACGTAG-TCTCCCTC 1743197 Query 2267 TTTCTCCATGTAGGTTTTGACATCTG---TTGAGCTTTTAGCTCCCTGAATGTTCGGATG 2323 || || ||||| | ||| |||| | |||| ||||| |||| || |||| Sbjct 1743198 CTTTTCGATGTATGATTTAACATTAGAGGTTGA---TTTAGAAAATTGAACATTTTGATG 1743254 Query 2324 GAAATGTGCTGACCTATTTGGG-GATATGAGATCGAAGAATCTGTTGTTTTG-GCATTTG 2381 ||| || | || || ||| ||||| | || || |||| ||| || | ||| | Sbjct 1743255 GAATTGAATGGTTCTGTTAGGGTGATATATG-TCAAAAAATCA-TTGATTGGTGCAACAG 1743312 Query 2382 AATTTGCCTTCGAATTGGATGAGAACATGCAGGTGAGGAGTCCCATCTTCATGTAATTCT 2441 ||||| ||| ||| ||||| || ||||||| || || ||| | |||| |||| Sbjct 1743313 AATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCT 1743372 Query 2442 CTGCAAATTCGAATGAATAATTTATTTGTTGGG--GTTGATAATTTAGTTATTTGGGAAA 2499 |||| | || |||||| | |||||| ||| ||||| ||| | || | || Sbjct 1743373 TTGCACACTCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATG--AA 1743430 Query 2500 GTGCTTCTTCTTTTGTGAGTGAGCAGTGAGGGTATGTTAGGAAATAATTTTTTGCATTTA 2559 | || || ||||||||||| || || ||| | || ||||||| |||||| ||||| Sbjct 1743431 GAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTA 1743490 Query 2560 TT 2561 || Sbjct 1743491 TT 1743492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8610887273508