Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_010435.1 Length=2740 Score E Sequences producing significant alignments: (Bits) Value seq519 105 1e-19 >seq519 Length=3254320 Score = 105 bits (116), Expect = 1e-19 Identities = 333/501 (66%), Gaps = 20/501 (4%) Strand=Plus/Plus Query 2083 AAATTTGAATTTAAATTATGAAATTGAAGTA-GAAAGTCTCTTGGGGCTTTCTCCTTTAG 2141 ||||| ||||| ||||||||| |||| || |||| ||| ||||| | ||||| |||| Sbjct 1743010 AAATTGGAATTGAAATTATGATATTGTAGAGTGAAACTCT-TTGGGTCATTCTCTTTTAT 1743068 Query 2142 TATATTGAGGGCCTGAGCTTTGGACCCTGCGTTGATTGCCTCGGCATATGCGTCGTTGGC 2201 ||| | | | | || | |||| | || || || | | ||| | || | Sbjct 1743069 TATTTGTAATGTTGAATCTCTTGACCTAGAATTAATCGCTTTAGTGTATACATCTACAAC 1743128 Query 2202 AGATTGGCAACCTCCTCTAGCTGATCTTCCATCGACCTGGAAAACTCCATGATCAAGGAT 2261 ||| || ||| ||||| ||||||||||| | || ||| | | ||| | | Sbjct 1743129 TATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTA 1743188 Query 2262 GTCTCCGTCTTTCTCCATGTAGGTTTTGACATC---GCTTGAGCTTTTAGCTCCCTGAAT 2318 |||||| || || || ||||| | ||| |||| | |||| ||||| |||| Sbjct 1743189 GTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGA---TTTAGAAAATTGAAC 1743245 Query 2319 GTTTGGATGGAAATGTGCTGACCTGCTTGGA-GATGTGAGGTCGAAGAATCTATTGTTTC 2377 ||| ||||||| || | ||| | || ||| | | ||| || |||| |||| || Sbjct 1743246 ATTTTGATGGAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATC-ATTGATTG 1743303 Query 2378 -TGCACTGGAACTTCCCTTCGAACTGAATGAGAACATGCAAGTGAGGAGTCCCATCTTCA 2436 |||| ||| || ||| ||| || || || |||||||| || || ||| | Sbjct 1743304 GTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTG 1743363 Query 2437 TGAAGCTCTCTGCAGATTCTAATGAAtttt---tttGAAGTTGGGGTTTGGAGATTTAAG 2493 || || ||| |||| | ||| ||||||||| |||| || | ||| | ||| || Sbjct 1743364 TGTAGTTCTTTGCACACTCTTATGAATTTTAGATTTGTAGG-GTAGTTGAGGCTTTTGAG 1743422 Query 2494 AATTGGGAAAGTGCCTCTTCTTTAGTGAGTGAGCAT-TTGGGATAAGTGAGGAAATAATT 2552 | || ||| || || ||||| ||||| || ||| |||||| |||||||||||| ||| Sbjct 1743423 A--TGATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATT 1743479 Query 2553 TTTGGCATTTATTTTAAACCT 2573 |||| ||||||| ||||||| Sbjct 1743480 TTTGCTATTTATTCTAAACCT 1743500 Score = 100 bits (110), Expect = 5e-18 Identities = 338/503 (67%), Gaps = 29/503 (6%) Strand=Plus/Plus Query 2083 AAATTTGAATTTAAATTATGAAATTGAAGTA-GAAAGTCTCTTGGGGCTTTCTCCTTTAG 2141 ||||| ||||| ||||||||| |||| || | |||| ||| ||||| ||||||| |||| Sbjct 1748825 AAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCT-TTGGGTCTTTCTCTTTTAT 1748883 Query 2142 TATATTGAGGGCCTGAGCT-TTGGACCCTGCGTTGATTGCCTCGGCATATGCGTCGTTGG 2200 ||| | | || | || |||| | | || || || || || ||| | || || Sbjct 1748884 TATTTGTAATGCTGCATCTCTTGGTGCATAA-TTAATCGCTTCAGCGTATACATC--TGC 1748940 Query 2201 CAG-ATTGGCA-ACCTCCTCTAGCTGATCTTCCATCGACCTGGAAAACTCCATGATCAAG 2258 | ||| | || ||| ||| | ||||||||||| | || ||| | | ||| | Sbjct 1748941 AACTATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTAC 1749000 Query 2259 GATGTCTCCGTCTTTCTCCATGTAGGTTTTGAC--ATC---GCTTGAGCTTTTAGCTCCC 2313 |||||| || || || ||||| | ||| || ||| | |||| |||||| Sbjct 1749001 ATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGA---TTTAGCATAT 1749057 Query 2314 TGAATGTTTGGATGGAAATGTGCTGACCTGCTTGGAGATGTGAGGTCGAAGAATCTATTG 2373 |||| ||||||||||| || | || | || ||| | |||||| || | |||| Sbjct 1749058 TGAACATTTGGATGGAATTGAATGGTTCTATTAGGGTTTGT-ATGTCGAAAAACC-ATTG 1749115 Query 2374 TTTC-TGCACTGGAACTTCCCTTCGAACTGAATGAGAACATGCAAGTGAGGAGTCCCATC 2432 || |||| ||| |||||| ||||| | || |||||||| || || |||| | Sbjct 1749116 ATTGGTGCAGCAGAATTTCCCTGTGAACTAGA-GATTACATGCAAATGTGGT-TCCCGTT 1749173 Query 2433 TTCATGAAGCTCTCTGCAGATTCTAATGAAtttt---tttGAAGTTGGGGTTTGGAGATT 2489 || || |||||||| | | | |||||||| |||| || | ||| ||| || Sbjct 1749174 GCTGTGTAGTTCTCTGCACACTTTTATGAATTTAAGATTTGTAGG-GTAGTT--GAGGTT 1749230 Query 2490 TAAGAATTGGGAAAGTGCCTCTTCTTTAGTGAGTGAGCAT-TTGGGATAAGTGAGGAAAT 2548 | || || ||| | || ||||| |||||| | ||| |||||| ||||||| |||| Sbjct 1749231 TTTGAGATGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGA-AAGTGAGAAAAT 1749289 Query 2549 AATTTTTGGCATTTATTTTAAAC 2571 |||||||| ||||||| ||||| Sbjct 1749290 AATTTTTGCTATTTATTCTAAAC 1749312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8658885530328