Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_010439.1 Length=2723 Score E Sequences producing significant alignments: (Bits) Value seq519 143 5e-31 seq1694 105 1e-19 seq1129 105 1e-19 seq3069 93.3 7e-16 seq2957 91.5 3e-15 >seq519 Length=3254320 Score = 143 bits (158), Expect = 5e-31 Identities = 343/505 (68%), Gaps = 14/505 (3%) Strand=Plus/Plus Query 2058 GCAAAAATTCTATCTAAATTCGCATTTAAATTGTGAAATTGTAAAATATAA-TCTTTAGG 2116 || ||||||| | | ||||| | ||| ||||| ||| |||||| | | || ||||| || Sbjct 1742995 GCGAAAATTCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAACTCTTTGGG 1743054 Query 2117 GGCTAATTCTCTAATTACATTAAGAGCCTCCGACTTACTT--CCT-GTGTTAATTGCTTT 2173 | ||||||| | ||| | | || | ||| ||| | ||||| ||||| Sbjct 1743055 ---TCATTCTCTTTTATTATTTGTAATGTT-GAATCTCTTGACCTAGAATTAATCGCTTT 1743110 Query 2174 GGCGTAAGCATCATTGGCTGTTTGTTGACCCCCTCTAGCAGATCTTCCGTCGACCTGAAA 2233 | ||| |||| || |||| | || || |||||||||||||| || | ||||| Sbjct 1743111 AGTGTATACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAA 1743170 Query 2234 CTCACCCCATTCGACGGTGTCTCCGTCTTTATCAATATAGGATTTGACGTCGGAGCTTGA 2293 ||| | || || ||| |||||| || || || || || ||||| || | ||| |||| Sbjct 1743171 ATCATCTCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGA 1743230 Query 2294 TTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGATCTGGTTGGG-GATACCAAATCGA 2352 ||||| |||| ||| ||||||| || | |||| | ||| |||| | || | Sbjct 1743231 TTTAGAAAATTGAACATTTTGATGGAATTGAATGGTTCTGTTAGGGTGATA-TATGTCAA 1743289 Query 2353 AGAATCGTTGATTCGTGCATCTGTATTTCCCCTCGAACTGGATGAGCACATGGAGATGAG 2412 | |||| |||||| ||||| | | |||| || ||| ||||| || ||||| | ||| | Sbjct 1743290 AAAATCATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTG 1743349 Query 2413 GGCTCCCATCTTCGTGCAGTTCTCTGCAGA-TCTTGATGAATTTTTTATTTGTTGGTGTT 2471 | ||| | ||| |||||| |||| | |||| ||||||||| |||||| || Sbjct 1743350 GTTCCCCGTTGCTGTGTAGTTCTTTGCACACTCTT-ATGAATTTTAGATTTGTAGGGTAG 1743408 Query 2472 TCTAGGTTTTGTAATTGGGTAAGGGTTTCCTCTTTAGTAAGAGAGCAT-TTGGGATATGT 2530 | ||| ||| | || ||| | || ||||| || || || ||| |||||| | || Sbjct 1743409 TTGAGGCTTTTGAGATGATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGT 1743467 Query 2531 AAGAAAATAATTTTTGGCATTTATT 2555 || |||| ||||||| ||||||| Sbjct 1743468 GAGGAAATGATTTTTGCTATTTATT 1743492 Score = 140 bits (154), Expect = 6e-30 Identities = 345/510 (68%), Gaps = 15/510 (3%) Strand=Plus/Plus Query 2053 GAGGTGCAAAAATTCTATCTAAATTCGCATTTAAATTGTGAAATTGTAAAATATAA-TCT 2111 |||| || || |||| | | ||||| | ||| ||||| ||| |||||| ||| || ||| Sbjct 1748805 GAGGGGCGAATATTCGACCCAAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCT 1748864 Query 2112 TTAGGGGCTAATTCTCTAATTACATTAAGAGCCTCCGACTTACTTCCTGTGT---TAATT 2168 || ||| || ||| | |||| | | || | | || ||| || | |||| Sbjct 1748865 TT-GGGTCTTTCTCTTTTATTATTTGTAATGC-TGCATCT--CTTGGTGCATAATTAATC 1748920 Query 2169 GCTTTGGCGTAAGCATCATTGGCTGTTTGTTGACCCCCTCTAGCAGATCTTCCGTCGACC 2228 |||| ||||| |||| || ||| | || || ||| |||||||||| || | Sbjct 1748921 GCTTCAGCGTATACATCTGCAACTATTTTCTTACATCCCCTAACAGATCTTCCATCAATT 1748980 Query 2229 TGAAACTCACCCCATTCGACGGTGTCTCCGTCTTTATCAATATAGGATTTGACG--TCGG 2286 ||||| ||| |||| || || |||||| || || ||||| || ||||| || || Sbjct 1748981 TGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAA 1749040 Query 2287 AGCTTGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGATCTGGTTGGGGATACCA 2346 || |||||||||| |||| ||||||||||| || | ||| || ||| | | Sbjct 1749041 AGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGTTCTA-TTAGGGTTTGTA 1749099 Query 2347 AATCGAAGAATCGTTGATTCGTGCATCTGTATTTCCCCTCGAACTGGATGAGCACATGGA 2406 ||||| || | |||||| ||||| | | ||||||| ||||| || || ||||| | Sbjct 1749100 TGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAACTAGA-GATTACATGCA 1749158 Query 2407 GATGAGGGCTCCCATCTTCGTGCAGTTCTCTGCAGATCTTGATGAATTTTTTATTTGTTG 2466 ||| || |||| | ||| ||||||||||| | || |||||||| |||||| | Sbjct 1749159 AATGTGGT-TCCCGTTGCTGTGTAGTTCTCTGCACACTTTTATGAATTTAAGATTTGTAG 1749217 Query 2467 GTGTTTCTAGGTTTTGTAATTGGGTAAGGGTTTCCTCTTTAGTAAGAGAGCAT-TTGGGA 2525 | | ||||||| | || ||| || ||||| || || | ||| |||||| Sbjct 1749218 GGTAGTTGAGGTTTTTGAGATGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGA 1749277 Query 2526 TATGTAAGAAAATAATTTTTGGCATTTATT 2555 | || ||||||||||||||| ||||||| Sbjct 1749278 AA-GTGAGAAAATAATTTTTGCTATTTATT 1749306 Score = 93.3 bits (102), Expect = 7e-16 Identities = 128/175 (73%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 1269 TTTCCTCAGGTTGTGGTTGAACTGTATTTGTACCGTTATGATGTCGTGGTTCCTCAGGAA 1328 |||||| || |||| |||||| ||||| || | ||||||||||||||| | || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1329 CGGCCTCTTGTCGTGTTGGGATATCTTGAAATAGAGGGGATTTGTTATCATCCAGGTATA 1388 | ||| | | || | | | ||||||||||||||||| ||||| || ||| | ||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1389 TACGCCATTCTCTGC-CTGAGCTGCAGTGATGAGTTCCCCTGTGCGAGAATCCAT 1442 ||| ||||| | ||| |||||| ||||| ||||||| ||| || ||||||| Sbjct 1741996 TACACCATTGT-TGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 >seq1694 Length=789422 Score = 105 bits (116), Expect = 1e-19 Identities = 124/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 1279 TTGTGGTTGAACTGTATTTGTACCGTTATGATGTCGTGGTTCCTCAGGAACGGCCTCTTG 1338 |||| ||||||||||||||| | | ||| ||||||||||| | ||| || || | Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1339 TCGTGTTGGGATATCTTGAAATAGAGGGGATTTGTTATCATCCAGGTATATACGCCATTC 1398 | |||| | | ||||||||||||||| |||||| || ||| | |||||||||||| Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1399 TCTGC-CTGAGCTGCAGTGATGAGTTCCCCTGTGCGAGAATCCAT 1442 | ||| | |||| |||||| ||||||| |||| | ||||||| Sbjct 596521 T-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT 596478 Score = 87.8 bits (96), Expect = 3e-14 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 2191 CTGTTTGTTGACCCCCTCTAGCAGATCTTCCGTCGACCTGAAACTCACCCCATTCGACGG 2250 ||||||| | || | |||||||||||||| |||| ||||| |||||||| || ||| Sbjct 599274 CTGTTTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGT 599215 Query 2251 TGTCTCCGTCTTTATCAATATAGGATTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGT 2310 |||||| || || ||||| || ||||| || | ||| |||||| | ||||| Sbjct 599214 AGTCTCCCTCCTTTTCAATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACAC 599155 Query 2311 TTGGATGGAAATG 2323 |||||||||| || Sbjct 599154 TTGGATGGAATTG 599142 Score = 87.8 bits (96), Expect = 3e-14 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 1267 GCTTTCCTCAGGTTGTGGTTGAACTGTATTTGTACCGTTATGATGTCGTGGTTCCTCAGG 1326 |||||||| | || || |||||||| ||| | | | |||||||||| |||| | | Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1327 AACGGCCTCTTGTCGTGTTGGGATATCTTGAAATAGAGGGGATTTGTTATCATC-CAGGT 1385 || || ||| | | |||| | ||||||||||||||||||||||| || | || || || Sbjct 600172 AATGGTCTCCTCTGGTGTCATGTTATCTTGAAATAGAGGGGATTTGGTA-CTTCTCAAGT 600114 Query 1386 ATATACGCCATT 1397 ||||||| |||| Sbjct 600113 ATATACGTCATT 600102 >seq1129 Length=1508174 Score = 105 bits (116), Expect = 1e-19 Identities = 224/327 (69%), Gaps = 22/327 (7%) Strand=Plus/Minus Query 1126 ATTACATTGTTTATGCTAATAACTCCTAAACTATCTAAATATTTCATACAATGATATTTA 1185 || ||||| |||| ||||| ||| | | || ||||||||||| || ||||| | | | Sbjct 693918 ATAACATTATTTAAACTAATGACTACAATACATTCTAAATATTTATTAAAATGAAAATCA 693859 Query 1186 AATAC--TCTTAAGAAACGCCAAGTCTGAGGACGTAAACGAGTCCAGATTTTGCAGATCA 1243 || || ||| | || | ||||| ||| ||| |||||||| || || Sbjct 693858 AA-ACGTTCTCTA-AATTGAGAAGTCGAAGGTGTTAATGTCGTCCAGATCTT------CA 693807 Query 1244 GAAAACATTGATGTATTCCCAAC-------GCTTTCCTCAGGTTGTGGTTGAACTGTATT 1296 |||||||| ||| ||| || | |||||| | ||||| |||||||||||| Sbjct 693806 -AAAACATTCATGCCTTCTGAAATTGTAGGGTTTTCCTAAAGTTGTAGTTGAACTGTATC 693748 Query 1297 TGTACCGTTATGATGTCGTGGTTCCTCAGGAACGGCCTCTTGTCGTGTTGGGATATCTTG 1356 || | | |||||||| |||| | | |||||| ||| | | |||||| | ||||||| Sbjct 693747 TGGATCTCTATGATGTTGTGGATGTTGTTGAACGGTCTCCTCTGGTGTTGTGTTATCTTG 693688 Query 1357 AAATAGAGGGGATTTGTTATCAT-CCAGGTATATACGCCATTCTCTGCCTGAGCTGCAGT 1415 ||||| ||| ||| | | | | ||| |||||||||||||| | | || || ||| | Sbjct 693687 TAATAGGGGGAATT--TAAACTTCCCAAGTATATACGCCATTATTTCACTAAGTCGCAAT 693630 Query 1416 GATGAGTTCCCCTGTGCGAGAATCCAT 1442 || || | ||| || ||| ||||||| Sbjct 693629 GA-GATATTCCCGGTACGAAAATCCAT 693604 >seq3069 Length=10854949 Score = 93.3 bits (102), Expect = 7e-16 Identities = 133/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 1263 CAACGCTTTCCTCAGGTTGTGGTTGAACTGTATTTGTACCGTTATGATGTCGTGGTTCCT 1322 ||| |||||||| |||||| |||||| ||||| || | | |||||||||||||| | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1323 CAGGAACGGCCTCTTGTCGTGTTGGGATATCTTGAAATAGAGGGGATTTGTTATCATC-C 1381 || || ||| | | |||| | || ||||||||| |||||||||| || | || | Sbjct 3754461 GTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTA-CTTCTC 3754519 Query 1382 AGGTATATACGCCATTCTCTGC-CTGAGCTGCAGTGATGAGTTCCCCTGTGCGAGAATCC 1440 | |||||||| |||| | ||| || ||| | ||||| || ||| |||||| ||| | Sbjct 3754520 AAATATATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATAC 3754578 Query 1441 AT 1442 || Sbjct 3754579 AT 3754580 >seq2957 Length=4215098 Score = 91.5 bits (100), Expect = 3e-15 Identities = 132/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 1264 AACGCTTTCCTCAGGTTGTGGTTGAACTGTATTTGTACCGTTATGATGTCGTGGTTCCTC 1323 || |||||| | ||||||| |||||||||||| || | |||||||| | | || | Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1324 AGGAACGGCCTCTTGTCGTGTTGGGATATCTTGAAATAGAGGGGATTTGTTATCATCC-A 1382 ||| | ||| | | |||| | ||||||||||||| || |||||| || | ||| | Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTA-CTTCCTA 1238867 Query 1383 GGTATATACGCCATTCTCTGC-CTGAGCTGCAGTGATGAGTTCCCCTGTGCGAGAATCCA 1441 ||||||||| |||| | ||| |||||| ||| ||| | | | | |||||| |||||| Sbjct 1238868 GGTATATACTTCATTGT-TGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCA 1238926 Query 1442 T 1442 | Sbjct 1238927 T 1238927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8604487505932