Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_010440.1 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq3069 140 6e-30 seq1129 131 3e-27 seq2957 125 1e-25 seq1694 116 6e-23 seq519 116 6e-23 >seq3069 Length=10854949 Score = 140 bits (154), Expect = 6e-30 Identities = 163/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1285 CAACGCTTTCCTCAGGTTGTGGTTGAACTGTATCTGGATCGTTATGATGTCGTGGTTGTT 1344 ||| |||||||| |||||| |||||| |||||||||||| |||||||||||||| ||| Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1345 GTTGAATGATCTCTCGTGGTGTTTGGTGATCTTGAAATATAGGGGATTTTTGATTGTCCA 1404 ||| |||| |||| |||||| || | ||||||||||||||||||| | | || Sbjct 3754461 GTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCA 3754520 Query 1405 GGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1464 |||| ||| || | | ||| | || | |||||| || ||| |||||||||| ||| Sbjct 3754521 AATATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACAT 3754580 Query 1465 GATTTGCACAATCTATGCCGAAGTAGTATGAGCAACCGCA 1504 || |||| ||| | |||||||| |||||| || Sbjct 3754581 TGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACA 3754620 >seq1129 Length=1508174 Score = 131 bits (144), Expect = 3e-27 Identities = 135/174 (78%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 1291 TTTCCTCAGGTTGTGGTTGAACTGTATCTGGATCGTTATGATGTCGTGGTTGTTGTTGAA 1350 |||||| | ||||| ||||||||||||||||||| |||||||| |||| |||||||||| Sbjct 693775 TTTCCTAAAGTTGTAGTTGAACTGTATCTGGATCTCTATGATGTTGTGGATGTTGTTGAA 693716 Query 1351 TGATCTCTCGTGGTGTTTGGTGATCTTGAAATATAGGGGATTTTTGATTGTCCAGGTATA 1410 | |||| ||||||| || |||||| |||| ||||| ||| | | ||| ||||| Sbjct 693715 CGGTCTCCTCTGGTGTTGTGTTATCTTGTAATA-GGGGGAATTTAAACTTCCCAAGTATA 693657 Query 1411 CACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1464 |||||| | | || | ||| ||| |||| ||| ||| || ||||||||||| Sbjct 693656 TACGCCATTATTTCACTAAGTCGCAATGAGATATT-CCCGGTACGAAAATCCAT 693604 Score = 80.6 bits (88), Expect = 5e-12 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1291 TTTCCTCAGGTTGTGGTTGAACTGTATCTGGATCGTTATGATGTCGTGGTTGTTGTTGAA 1350 |||| | | ||||| |||||||||||| |||||| |||||||||||| ||||||||||| Sbjct 679757 TTTCATAAAGTTGTAGTTGAACTGTATTTGGATCTCTATGATGTCGTGATTGTTGTTGAA 679698 Query 1351 TGATCTC 1357 || |||| Sbjct 679697 TGGTCTC 679691 >seq2957 Length=4215098 Score = 125 bits (138), Expect = 1e-25 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 1286 AACGCTTTCCTCAGGTTGTGGTTGAACTGTATCTGGATCGTTATGATGTCGTGGTTGTTG 1345 || |||||| | ||||||| |||||||||||||||||| |||||||| | | |||||| Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1346 TTGAATGATCTCTCGTGGTGTTTGGTGATCTTGAAATATAGGGGATTTTTGATTGTCCAG 1405 |||||||||||| |||||| || ||||||||||| || ||||| | | | || Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAG 1238868 Query 1406 GTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1464 ||||| || || | | ||| |||| ||| |||| | | | |||||||||||||| Sbjct 1238869 GTATATACTTCATTGTTGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCAT 1238927 >seq1694 Length=789422 Score = 116 bits (128), Expect = 6e-23 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 1301 TTGTGGTTGAACTGTATCTGGATCGTTATGATGTCGTGGTTGTTGTTGAATGATCTCTCG 1360 |||| |||||||||||| |||||| ||| |||||||||||||||||||||| | || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1361 TGGTGTTTGGTGATCTTGAAATATAGGGGATTTTTGATTGTCCAGGTATACACGCCACTC 1420 | |||| || ||||||||||| || ||||| | | ||| | ||| |||||| | Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1421 TCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1464 | ||| ||| ||||||| |||||| |||| ||||||||| Sbjct 596521 TTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT 596478 Score = 109 bits (120), Expect = 1e-20 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1289 GCTTTCCTCAGGTTGTGGTTGAACTGTATCTGGATCGTTATGATGTCGTGGTTGTTGTTG 1348 |||||||| | || || |||||||| ||||| |||| |||||||||| ||||||||||| Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1349 AATGATCTCTCGTGGTGTTTGGTGATCTTGAAATATAGGGGATTT 1393 |||| |||| |||||| || ||||||||||| ||||||||| Sbjct 600172 AATGGTCTCCTCTGGTGTCATGTTATCTTGAAATAGAGGGGATTT 600128 >seq519 Length=3254320 Score = 116 bits (128), Expect = 6e-23 Identities = 131/174 (75%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 1291 TTTCCTCAGGTTGTGGTTGAACTGTATCTGGATCGTTATGATGTCGTGGTTGTTGTTGAA 1350 |||||| || |||| |||||| ||||||||||| ||||||||||||||||||||| || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1351 TGATCTCTCGTGGTGTTTGGTGATCTTGAAATATAGGGGATTTTTGATTGTCCAGGTATA 1410 | |||| |||| | || ||||||||||| |||| |||| | | ||| | ||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1411 CACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1464 || ||| | | ||| |||| |||||| |||||| ||| |||||||||| Sbjct 1741996 TACACCATTGTTGCACTGAG-CCTAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8726083089876