Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_010441.2 Length=2750 Score E Sequences producing significant alignments: (Bits) Value seq1129 78.8 2e-11 seq519 77.0 6e-11 >seq1129 Length=1508174 Score = 78.8 bits (86), Expect = 2e-11 Identities = 139/196 (71%), Gaps = 5/196 (3%) Strand=Plus/Minus Query 1605 AATTCTGCATTCTTTAGTGCCCAGTCTTTGAGTGCAGAATTTTTATCCTCATCTAGGTAC 1664 ||||||||||| | || | | | | ||||| ||| ||||| || | ||||||| | Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1665 TCTTTATACGACG-ACGTTGGTCCTGGATTGCAGAGGAAGATAG-TGGGAATTCCACCTT 1722 |||||||| ||| || || |||||||| || | ||||| | ||||| | ||||| Sbjct 679394 TCTTTATAGCACGCACCTT-CACCTGGATTACACAATAAGATTGATGGGAGGT-AACCTT 679337 Query 1723 TAATTTGAATGGGCTTCCCGTATTTCGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGA 1782 ||||| ||| ||| ||||| || || || |||||||| | | | | | |||| || | Sbjct 679336 TAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAAT-CTTTTTGCCCCCAATCA 679278 Query 1783 ATTCTTTAAAGTGCTT 1798 | ||||| | ||||| Sbjct 679277 AATCTTTCTAATGCTT 679262 >seq519 Length=3254320 Score = 77.0 bits (84), Expect = 6e-11 Identities = 217/331 (66%), Gaps = 2/331 (1%) Strand=Plus/Plus Query 2240 TCTTCCGTCGATCTGGAATTCGCCCCATTCGAGTGTGTCTCCGTCCTTGTCGATATAGGA 2299 |||||| || || || || || | || || | |||||| ||||| ||||| || || Sbjct 1743153 TCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGA 1743212 Query 2300 CTTGACGTCGGAGCTCGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGTT 2359 || || | ||| | ||||||| |||| || ||||||| || | ||||| Sbjct 1743213 TTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGAATGGTTCTGTT 1743272 Query 2360 TGGG-GATACCAAATCGAAGAATCTGTTATTTTGGCACTTGTATTTGCCTTCGAACTGGA 2418 ||| |||| | || || |||| | ||| ||| | |||| ||| ||| |||| Sbjct 1743273 AGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGA 1743331 Query 2419 CCAGCACGTGGAGATGAGGGCTCCCATCTTCGTGTAACTCTCGACAGATCTTTATGTATT 2478 || || || | ||| || ||| | ||||| ||| || | ||||| ||| Sbjct 1743332 TAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACACTCTTATGAATT 1743391 Query 2479 TTTTATTTGTTGGTGTGTTTAGGGTTTGCAATTGGGAAAGTGCTTCTTCTTTAGTGAGAG 2538 || |||||| || ||| ||| ||| | || ||| || || ||||| ||||| | Sbjct 1743392 TTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCATCTTTTGTGAGGG 1743451 Query 2539 AGCATTGTGGATAAGTGAGGAAATAATTTTT 2569 | ||| ||| |||||||||||| |||||| Sbjct 1743452 AACATCTTGGGAAAGTGAGGAAATGATTTTT 1743482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8690884368208