Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_010618.1 Length=2747 Score E Sequences producing significant alignments: (Bits) Value seq3069 86.0 1e-13 >seq3069 Length=10854949 Score = 86.0 bits (94), Expect = 1e-13 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 1284 CAACGCTTTCCTCAGGTTGTAGTTGAATTGGACTTGTAATGTGATGATGTCGTGTTTCCT 1343 ||| |||||||| |||||| |||||||||| | || | ||||||||||| | | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1344 CAGAAATGGTCTCTCGTGGTGTTTGGTTATCTTGAAATATAGGGGATTTTTGACCGTCCA 1403 |||||||||| |||||| |||| ||||||||||||||||||| || || Sbjct 3754461 GTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCA 3754520 Query 1404 GATATACACGCCATTCTCTGATTGAGTTGCAGTGAGTAGTTCCCCGGTGCGTGAATCCAT 1463 ||||| ||| |||| | | | || | |||||| || ||| ||||| ||| ||| Sbjct 3754521 AATATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACAT 3754580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8681284716844