Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_010647.1 Length=2630 Score E Sequences producing significant alignments: (Bits) Value seq519 105 1e-19 seq1694 98.7 2e-17 >seq519 Length=3254320 Score = 105 bits (116), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1488 GCATTATGAATGGTCCAGTTGTGTAAAGCTCGGTTTTCTTCTTTACCGAGGAAGTCTTTA 1547 ||||| || | |||| || | | |||| ||||| || ||| | ||||| |||||| Sbjct 1742258 GCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTA 1742317 Query 1548 TAACTGGCACCCTCACCAGGATTGCACAGCACGATTGAAGGGATACCTCCTTTAATTTGA 1607 || |||||||||| ||| ||||| |||||||| ||||| || |||||||||| | Sbjct 1742318 TAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAA 1742377 Query 1608 ACCGGCTTTCCATATTTACAGTTTGACTGCCAGTCCCTTTGAGCCCCAATTAACTCTTTC 1667 || | || | | | || || || ||||| || |||| ||||||| || |||||| Sbjct 1742378 ACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTC 1742437 Query 1668 CAATGCT---TTAAT-TTCAAATAATTGGGGCTTATGTCATCAATGACGTTGTA 1717 ||||||| | || || || || |||| || ||||||||||| || || Sbjct 1742438 CAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATA 1742491 >seq1694 Length=789422 Score = 98.7 bits (108), Expect = 2e-17 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 1521 TTTTCTTCTTTACCGAGGAAGTCTTTATAACTGGCACCCTCACCAGGATTGCACAGCACG 1580 ||||| |||| | | |||| |||||||| ||||| ||||| ||||| |||| ||| Sbjct 599833 TTTTCCTCTTCATCCGGGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATACG 599774 Query 1581 ATTGAAGGGATACCTCCTTTAATTTGAACCGGCTTTCCATATTTACAGTTTGACTGCCAG 1640 ||||| | ||| | | |||||||||||| | || ||||| || || | ||||| Sbjct 599773 ATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAA 599714 Query 1641 TCCCTTTGAGCCCCAATTAACTCTTTCCAATGCTTTAATTTCAAATAATTGGGGCTTATG 1700 || |||| ||||||| || |||||| | ||||| | || || ||| |||| | Sbjct 599713 TCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCA 599654 Query 1701 TCATCAATG 1709 ||||||||| Sbjct 599653 TCATCAATG 599645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8306898313648