Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_010791.1 Length=2738 Score E Sequences producing significant alignments: (Bits) Value seq1694 87.8 3e-14 seq519 86.0 1e-13 >seq1694 Length=789422 Score = 87.8 bits (96), Expect = 3e-14 Identities = 199/297 (67%), Gaps = 8/297 (3%) Strand=Plus/Minus Query 1602 AATTTTGCATTTTGTAATGCCCACCTTTTGAGAGCTGCATTCCGCTCCTCGTCTAAGTAT 1661 |||| ||||||||| | | ||| | ||||| || |||| ||| || || | | Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1662 TCTTTATAGGACGAAGTTGGGCCTGGATTGCAGAGGAAGATAGTGGGAATACCACCTTTA 1721 ||||||||||||| | | |||||||| || | | ||| | | || ||| |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1722 ATTTGAATTGGTTTCCCGTATTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAAC 1781 ||||||| ||||||| || ||| | |||||||| || |||| |||| || || Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1782 TCTTTAAAGTG------CTTTAAGT-AGTGGGGGTCTACATCATCAATCACGTTGTACCA 1834 ||||| | || |||||||| |||||| | || |||||||||| | || | Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAG-CTGCATCATCAATGTCATTATCTGG 599634 Query 1835 GGCATCATTATTGTACACTCTTGGACTGAGGTCTAAGTGACCACATAGATAATTATG 1891 |||||||| | | | ||| | ||| || ||||||| | || |||||||| Sbjct 599633 TGCATCATTCTAGAATACTGATTTGTTGAAATCATAGTGACCGCTTATGTAATTATG 599577 >seq519 Length=3254320 Score = 86.0 bits (94), Expect = 1e-13 Identities = 179/266 (67%), Gaps = 12/266 (5%) Strand=Plus/Plus Query 1589 GGAGAGGAAGAAGAATTTTGCATTTTGTAATGCCCACCTTTTGAGAGCTGCATTCCGCTC 1648 ||||| ||| |||| |||||||||| ||| | ||||||||| |||| ||| Sbjct 1742239 GGAGATGAATTCAAATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTC 1742298 Query 1649 CTCGTCTAAGTATTCTTTATAGGACGAAGTTGGGCCTGGATTGCAGAGGAAGATAGTGGG 1708 | |||| | | ||||||||||| | | | | ||| ||| | | ||| | || Sbjct 1742299 ATTATCTAGGAAATCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGG 1742358 Query 1709 AATACCACCTTTAATTTGAATTGGTTTCCCGTATTTGGTGTTGCTTTGCCAGTCCCTTTG 1768 || ||||||||||||| || |||||| | ||| || |||||||| || |||| Sbjct 1742359 GATGCCACCTTTAATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTG 1742418 Query 1769 GGCCCCCATGAACTCTTTAAAGTG----------CTTTAAGTA-GTGGGGGTCTACATCA 1817 |||| || || ||||| | || ||||||||| ||||| | |||||||| Sbjct 1742419 CACCCCAATCAATTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAG-CTACATCA 1742477 Query 1818 TCAATCACGTTGTACCAGGCATCATT 1843 ||||| || || || |||||||| Sbjct 1742478 TCAATGACATTATATGTTGCATCATT 1742503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8652485762752