Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_010812.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value seq1694 78.8 2e-11 seq519 78.8 2e-11 >seq1694 Length=789422 Score = 78.8 bits (86), Expect = 2e-11 Identities = 168/249 (67%), Gaps = 8/249 (3%) Strand=Plus/Minus Query 1604 AATTCTGCATTCTTGAGAGCCCACTCTTTTAATGCTGAATTTTTATCCTCATTCAAGTAC 1663 |||| |||||| | ||| | ||| | || | || ||||| || |||| | | | Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1664 TCTTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTA 1723 |||||||| || | | |||||||| || | | ||| | || ||| ||| |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1724 ATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAAT 1783 ||||||| ||||||| |||||| | |||||||| || |||| |||| || ||| Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1784 TCTTTAAAGTG------CTTTAGGT-AGTGGGGGTCGACGTCATCAATGACGTTATACCA 1836 ||||| | || ||||| || |||||| | | | ||||||||| | |||| Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAG-CTGCATCATCAATGTCATTATCTGG 599634 Query 1837 AGCATCATT 1845 |||||||| Sbjct 599633 TGCATCATT 599625 >seq519 Length=3254320 Score = 78.8 bits (86), Expect = 2e-11 Identities = 120/170 (71%), Gaps = 12/170 (7%) Strand=Plus/Plus Query 1689 GATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTACTTGG 1748 ||| ||| | | ||| | |||||| ||||||||||||| || |||||| ||||| Sbjct 1742337 GATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAAACTTGC 1742396 Query 1749 TGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTG----------CTTT 1798 || |||||||| || |||| |||| || |||||||| | || |||| Sbjct 1742397 AATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACATCTTT 1742456 Query 1799 AGGTA-GTGGGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTGC 1847 | ||| ||||| | | || ||||||||||| ||||| |||||||||| Sbjct 1742457 AAGTATGTGGGAG-CTACATCATCAATGACATTATATGTTGCATCATTGC 1742505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8710083670936