Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_010833.1 Length=2708 Score E Sequences producing significant alignments: (Bits) Value seq1129 159 6e-36 seq519 154 3e-34 seq1694 145 1e-31 >seq1129 Length=1508174 Score = 159 bits (176), Expect = 6e-36 Identities = 187/249 (75%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 1573 AATTTAGCATTCTTGATCGTCCAGTTCTTCAGAGCAAGGTTTTCCTCTTTCTCGAGGAAA 1632 |||| ||||| | || |||| | ||||| || |||| ||||||||||| || |||||| Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1633 TCTTTATAGCTGGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCGCCTTTA 1692 |||||||||| || || || || ||||| || | | ||||||||||| |||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1693 ATTTGAACAGGCTTTCCGTATTTGCAATTTGACTGCCAGTCCTTTTGAGCTCCCATCAAT 1752 ||| |||| || || || || |||||||| ||||| || ||||| | || ||||| Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTTTTG-CCCCCAATCAAA 679276 Query 1753 TCTTTCCAGTGCTTTAGCTTTAGGT-AGTGCGGAGGGACGTCATCAATGACGTTATATTC 1811 |||||| | ||||| | ||||| || |||| |||| || ||||| ||||| |||||| Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTAAGTG-GGAGTTACATCATCTATGACATTATATGT 679217 Query 1812 AGCCTCATT 1820 || ||||| Sbjct 679216 TGCATCATT 679208 >seq519 Length=3254320 Score = 154 bits (170), Expect = 3e-34 Identities = 190/254 (75%), Gaps = 8/254 (3%) Strand=Plus/Plus Query 1573 AATTTAGCATTCTTGATCGTCCAGTTCTTCAGAGCAAGGTTTTCCTCTTTCTCGAGGAAA 1632 |||| |||||| | | | |||| ||||| ||||| | |||||||| || || |||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1633 TCTTTATAGCTGGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCGCCTTTA 1692 ||||||||| || ||||| | ||| ||| | |||||||||||||| || |||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1693 ATTTGAACAGGCTTTCCG-TATTTGCAATTTGACTGCCAGTCCTTTTGAGCTCCCATCAA 1751 |||| ||| | |||||| | |||||||| ||||| || ||||| | || ||||| Sbjct 1742372 ATTTAAAC-GAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAA 1742430 Query 1752 TTCTTTCCAGTG----CTTTAGCTTTAGGTA-GTGCGGAGGGACGTCATCAATGACGTTA 1806 ||||||||| || || | ||||| ||| ||| |||| || ||||||||||| ||| Sbjct 1742431 TTCTTTCCAATGCTACCTACATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTA 1742489 Query 1807 TATTCAGCCTCATT 1820 ||| || ||||| Sbjct 1742490 TATGTTGCATCATT 1742503 >seq1694 Length=789422 Score = 145 bits (160), Expect = 1e-31 Identities = 183/249 (73%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 1573 AATTTAGCATTCTTGATCGTCCAGTTCTTCAGAGCAAGGTTTTCCTCTTTCTCGAGGAAA 1632 |||| ||||| | || |||||| ||||| || || | |||||||||| || ||||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1633 TCTTTATAGCTGGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCGCCTTTA 1692 ||||||||| || || || || ||||| || | |||||||||| ||| | | |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1693 ATTTGAACAGGCTTTCCGTATTTGCAATTTGACTGCCAGTCCTTTTGAGCTCCCATCAAT 1752 ||||||||| | || || || ||||||| ||||| || ||||| | || || ||| Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1753 TCTTTCCAGTGCTTTAGCTTTAGGT-AGTGCGGAGGGACGTCATCAATGACGTTATATTC 1811 |||||| | ||||| | ||||| || |||| |||| | ||||||||| | |||| | Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTG-GGAGCTGCATCATCAATGTCATTATCTGG 599634 Query 1812 AGCCTCATT 1820 || ||||| Sbjct 599633 TGCATCATT 599625 Score = 100 bits (110), Expect = 5e-18 Identities = 113/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 1573 AATTTA-GCATTCTTGATCGTCCAGTTCTTCAGAGCAAGGTTTTCCTCTTTCTCGAGGAA 1631 |||||| |||| | || | ||| |||||||| || | ||||||||||| || | ||| Sbjct 596277 AATTTATGCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAA 596218 Query 1632 ATCTTTATAGCTGGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCGCCTTT 1691 |||| | ||| || || || | ||||||| | |||||||||||||| || ||||| Sbjct 596217 ATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTT 596158 Query 1692 AATTTGAACAGGCTTTCCGTATTTGCAATT 1721 ||||| ||| || || || || |||||||| Sbjct 596157 AATTTTAACGGGTTTCCCATACTTGCAATT 596128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8556489249112