Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_010835.1 Length=2560 Score E Sequences producing significant alignments: (Bits) Value seq1129 170 3e-39 seq519 170 3e-39 seq1694 156 7e-35 >seq1129 Length=1508174 Score = 170 bits (188), Expect = 3e-39 Identities = 180/236 (76%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 1427 AATTTAGCATTATGGAGTGTCCACGACTTGAGAGATGCGTTTTCCTCTTTGGCTAGGAAA 1486 |||| ||||| ||||| ||| | |||||| | | ||||||||||| |||||||| Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1487 TCTTTATAGCTGGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTA 1546 |||||||||| || || || || ||||| || | | ||||||||||| |||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1547 ATTTGAACTGGCTTTCCGTACTTACAATTTGATTGCCAATCTATTTGGGCCCCAATCAAT 1606 ||| |||| || || || ||||| ||||| |||||||||| ||| | |||||||||| Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAATCT-TTTTGCCCCCAATCAAA 679276 Query 1607 TCTTTCCAGTGCTTTAACTTTAAGTAATGCGGAGAGACGTCATCAATGACGTTATA 1662 |||||| | ||||| | |||||||||| |||| || ||||| ||||| ||||| Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATA 679220 >seq519 Length=3254320 Score = 170 bits (188), Expect = 3e-39 Identities = 184/241 (76%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 1427 AATTTAGCATTATGGAGTGTCCACGACTTGAGAGATGCGTTTTCCTCTTTGGCTAGGAAA 1486 |||| |||||| || || |||| |||||||| | | |||||||| || |||||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1487 TCTTTATAGCTGGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTA 1546 ||||||||| || ||||| | ||| ||| | |||||||||||||| || |||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1547 ATTTGAACTGGCTTTCCG-TACTTACAATTTGATTGCCAATCTATTTGGGCCCCAATCAA 1605 |||| ||| | |||||| |||| ||||| |||||||||| |||| |||||||||| Sbjct 1742372 ATTTAAAC-GAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAA 1742430 Query 1606 TTCTTTCCAGTG----CTTTAACTTTAAGTAATGCGGAGAGACGTCATCAATGACGTTAT 1661 ||||||||| || || | ||||||||| |||| || ||||||||||| |||| Sbjct 1742431 TTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTAT 1742490 Query 1662 A 1662 | Sbjct 1742491 A 1742491 >seq1694 Length=789422 Score = 156 bits (172), Expect = 7e-35 Identities = 212/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 1427 AATTTAGCATTATGGAGTGTCCACGACTTGAGAGATGCGTTTTCCTCTTTGGCTAGGAAA 1486 |||| ||||| ||||| ||||| |||||| | | |||||||||| | ||||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1487 TCTTTATAGCTGGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTA 1546 ||||||||| || || || || ||||| || | |||||||||| ||| | | |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1547 ATTTGAACTGGCTTTCCGTACTTACAATTTGATTGCCAATCTATTTGGGCCCCAATCAAT 1606 |||||||| | || || ||||| |||| |||||||||| |||| ||||||| ||| Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1607 TCTTTCCAGTGCTTTAACTTTAAGTAATGCGGAGAGACGTCATCAATGACGTTATACAGT 1666 |||||| | ||||| | |||||||||| |||| | ||||||||| | |||| || Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTATCTGGT 599633 Query 1667 ACATCGTTTGAGTAAACCCTAGAATTGAAATCCAGGTGTCCACTTAGATAGTTATG 1722 |||| || || | || |||||||| ||| || |||| || ||||| Sbjct 599632 GCATCATTCTAGAATACTGATTTGTTGAAATCATAGTGACCGCTTATGTAATTATG 599577 Score = 96.9 bits (106), Expect = 6e-17 Identities = 118/160 (74%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 1427 AATTTA-GCATTATGGAGTGTCCACGACTTGAGAGATGCGTTTTCCTCTTTGGCTAGGAA 1485 |||||| |||| ||||||| ||| ||| || | | ||||||||||| | | ||| Sbjct 596277 AATTTATGCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAA 596218 Query 1486 ATCTTTATAGCTGGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTT 1545 |||| | ||| || || || | ||||||| | |||||||||||||| || ||||| Sbjct 596217 ATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTT 596158 Query 1546 AATTTGAACTGGCTTTCCGTACTTACAATTTGATTGCCAA 1585 ||||| ||| || || || ||||| ||||| ||||||| Sbjct 596157 AATTTTAACGGGTTTCCCATACTTGCAATTACTTTGCCAA 596118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8082906448488