Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_010837.1 Length=2666 Score E Sequences producing significant alignments: (Bits) Value seq1129 122 1e-24 seq1694 96.9 6e-17 >seq1129 Length=1508174 Score = 122 bits (134), Expect = 1e-24 Identities = 240/351 (68%), Gaps = 8/351 (2%) Strand=Plus/Minus Query 1557 TTTTCCTCTCTGTCTAGGAACCTTTTATAGCTGGCCCCCTCGCCAGGATTGCAAAGCACG 1616 ||||||||| | |||||||| |||||||| || || || || ||||| || | | | Sbjct 679415 TTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAG 679356 Query 1617 ATGCATGGGATGCCCCCTTTAATTTGAACTGGTTTACCGTATTTACAATTTGACTGCCAG 1676 || |||||| | ||||||||| |||| ||||| || || || ||||| ||||| Sbjct 679355 ATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAA 679296 Query 1677 TCCTTCTGGGCCCCAATTAACTCTTTCCAGTGTTTCATCTTTAAATATTTGGGGTCCACG 1736 || || || ||||||| || |||||| | || ||||||||||| || |||| || Sbjct 679295 TCTTTTTGC-CCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACA 679237 Query 1737 TCATCAATAATATTGTAGTGTGCTTCGT--TGGAATAGCACTTAGGGTTAAAGTCTAGGT 1794 ||||| || | ||| || ||| || | ||||||| || ||| || |||| || Sbjct 679236 TCATCTATGACATTATATGTTGCATCATTGTGGAATACTGATT--TGTTGAAATCTAAGT 679179 Query 1795 GA---CCACTTAAATAATTGTGGACCCCTAAAGCACCGGCCCACATCGTCTTCCCTGTTC 1851 || || | | ||||| || | | | | |||| | | || || ||| ||| Sbjct 679178 GATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTC 679119 Query 1852 GAGAATCACCTTCAATTATTATACTAATAGGTCTCTCCGGCCGCGCAGCGG 1902 || |||||||| |||||||| ||||||| || |||| |||| ||| Sbjct 679118 GACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq1694 Length=789422 Score = 96.9 bits (106), Expect = 6e-17 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 1557 TTTTCCTCTCTGTCTAGGAACCTTTTATAGCTGGCCCCCTCGCCAGGATTGCAAAGCACG 1616 ||||||||| || |||| ||||||| || || || || ||||| || | ||| Sbjct 599833 TTTTCCTCTTCATCCGGGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATACG 599774 Query 1617 ATGCATGGGATGCCCCCTTTAATTTGAACTGGTTTACCGTATTTACAATTTGACTGCCAG 1676 || ||| |||| | | |||||||||||| |||| || || || |||| ||||| Sbjct 599773 ATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAA 599714 Query 1677 TCCTTCTGGGCCCCAATTAACTCTTTCCAGTGTTTCATCTTTAAATATTTGGGGTCCACG 1736 || || || ||||||| || |||||| | || ||||||||||| || |||| | | Sbjct 599713 TCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCA 599654 Query 1737 TCATCAAT 1744 |||||||| Sbjct 599653 TCATCAAT 599646 Score = 82.4 bits (90), Expect = 1e-12 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 2137 CTGTCTGTTTACCTCCTCGAGCAGATCTTCCGTCGATCTGAAAATTACCCCATTCGATGT 2196 |||| || |||| || | |||||||||||| ||||| ||||||| |||||| || | || Sbjct 599274 CTGTTTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGT 599215 Query 2197 AATCTCCGTCCTTCTCAACATATGATTT 2224 | ||||| ||||| |||| |||||||| Sbjct 599214 AGTCTCCCTCCTTTTCAATGTATGATTT 599187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8422094130016