Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_010840.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value seq519 102 1e-18 seq1694 87.8 3e-14 >seq519 Length=3254320 Score = 102 bits (112), Expect = 1e-18 Identities = 348/535 (65%), Gaps = 7/535 (1%) Strand=Plus/Plus Query 2053 ATGGCGAACGATAAACTTCGATTCGAGAAGGAAAAATCCGATCTAAATTTGTCATTAAAT 2112 || |||||| ||| ||| ||| ||| | || || ||| | ||||| | | |||| Sbjct 1748781 ATTGCGAACAATATACTAGAATTAGAGGGGCGAATATTCGACCCAAATTAGAATTGAAAT 1748840 Query 2113 TGTGAAACTGCAACACATAA-TCTTTTGGTGCTAATTCTTTTAGCACCTTCAATGCGTCT 2171 | ||| | || | | || ||||| ||| || ||||||| | | ||||| | Sbjct 1748841 TATGATATTGTAGAATGAAACTCTTTGGGT-CTTTCTCTTTTATTATTTGTAATGCTGCA 1748899 Query 2172 TCTTTATTTCCAGTATTAATTGCTTGTGCGTATGCATCGTTAGCTGTTTGTTGACCACCA 2231 ||| | | || |||||| |||| |||||| |||| | || ||| | || || Sbjct 1748900 TCTCTTGGTGCATAATTAATCGCTTCAGCGTATACATCTGCAACTATTTTCTTACATCCC 1748959 Query 2232 CGAGCAGATCGTCCATCGATCTGGAAAACACCCCACTCTAAAACGTCTCCGTCTTTGTCG 2291 | | |||||| |||||| || || ||| || |||| |||| | |||||| || || || Sbjct 1748960 CTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCA 1749019 Query 2292 ATGTATGTCTTGAC--ATCTGACGCTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTG 2349 ||||||| || || ||| | | ||||||||| |||| || |||||||| || Sbjct 1749020 ATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAA 1749079 Query 2350 CTGACCGACTTGGGGCAACCAAGTCGAAGAATCTGTTATTTTTGCACTGGAATTTTCCTT 2409 | | | || ||| | |||||| || | | ||| |||| |||||| ||| Sbjct 1749080 TGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTG 1749138 Query 2410 CAAATTGGATGAGAACATGGATATGCGGAGACCCATCTTCGTGAAGCTCTCTGCAGATTT 2469 || | || || ||||| | ||| || || | | ||| || |||||||| | || Sbjct 1749139 TGAACTAGA-GATTACATGCAAATGTGGTTCCCGTTGCT-GTGTAGTTCTCTGCACACTT 1749196 Query 2470 TTATGAATTTCTTTGATGTAGGGGTTTCTAGGTTTTGTAATTGGGAAAGTGCCTCTTCTT 2529 |||||||||| ||||||| | ||||||| | || ||| | || |||| Sbjct 1749197 TTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGAACATCATCTT 1749256 Query 2530 TAGTTAGAGAGCACTTTGGATATGTAAGGAAATAGTTTTTTGCATTTATTCTGAA 2584 | || || | || |||| | || || ||||| ||||| ||||||||| || Sbjct 1749257 TTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATTCTAAA 1749311 >seq1694 Length=789422 Score = 87.8 bits (96), Expect = 3e-14 Identities = 150/211 (71%), Gaps = 14/211 (7%) Strand=Plus/Minus Query 1288 TTGTGGTTGAACTGTATTTGGACTGTTATAATGTCGTGGTTCGTGAGGCAAGGT---CTC 1344 |||| ||||||||||||||||| ||||||||||||||| || | | ||| ||| Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1345 T--CGTCGTGTTTCAAAATTTTGAAATACAGGGGATTTGGAACGTCCCAGATATACACGC 1402 | |||||||| || |||||||| || ||||||| || ||||| ||| |||| Sbjct 596581 TAGTGTCGTGTT-----ATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGC 596527 Query 1403 CACTCTCTGC-TCGATCCGCAGTGATGTATTCCCCTGTGCGTGAATCCGT-GATCATGGC 1460 || | | ||| ||| || |||||| | |||||| |||| ||||| | | || | || Sbjct 596526 CATTGT-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCT-GC 596469 Query 1461 AGTTGATCGATATGTAATACGAACAACCACA 1491 | || || | |||||| | |||||||| Sbjct 596468 AATTAATATGTTGGTAATATGTGCAACCACA 596438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8710083670936