Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_010946.1 Length=2724 Score E Sequences producing significant alignments: (Bits) Value seq519 109 9e-21 >seq519 Length=3254320 Score = 109 bits (120), Expect = 9e-21 Identities = 334/503 (66%), Gaps = 19/503 (4%) Strand=Plus/Plus Query 2057 GAGGTGCAAAAATCCTATCTAAATTAGAATTTAAATTATGAAATTGAAAAATATAATCTT 2116 |||| || || || | | | ||||||||||| ||||||||| |||| | ||| || | Sbjct 1748805 GAGGGGCGAATATTCGACCCAAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCT 1748864 Query 2117 TTGGGAGTTTCTCCCTTATTATACTTAGTGCTGCTTCT-TTGGAACCTGCGT--TTAA-G 2172 ||||| |||||| ||||||| || |||||| ||| |||| ||| | |||| Sbjct 1748865 TTGGGTCTTTCTCTTTTATTATTTGTAATGCTGCATCTCTTGG----TGCATAATTAATC 1748920 Query 2173 GCTTCTGCGCATGCGTC-GTTAGAATTCTGGCACCCTCCTCTAGCACTTCGACCGTCGAT 2231 ||||| ||| || | || | | ||| | | | ||| ||| || || || || || Sbjct 1748921 GCTTCAGCGTATACATCTGCAACTATTTTCTTA-CATCCCCTAACAGATCTTCCATCAAT 1748979 Query 2232 CTGGAATTCTCCCCAGTCGAGGGTGTCTCCGTCCTTGTCCAGGTAGGATTTGA--CGTCG 2289 || || || |||| || | |||||| ||||| || | ||| ||||| | | || Sbjct 1748980 TTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCA 1749039 Query 2290 GAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTAGACTTGGTTGGGGATACC 2349 || | |||||||| |||| || |||||||| || | | | || ||| | Sbjct 1749040 AAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAAT-GGTTCTATTAGGGTTTGT 1749098 Query 2350 AAGTCGAAGAATCTGTTATTCGTGCAGTTGCATTTGCCTTCGAATTGAATGAGCACATGG 2409 | |||||| || | | ||| |||||| | |||| ||| ||| | | || ||||| Sbjct 1749099 ATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAACT-AGAGATTACATGC 1749157 Query 2410 AGATGAGGGCTCCCATCTTCGTGCAGCTCTCTACAGATTTTGATATATTTTTTATTTGTT 2469 | ||| || |||| | ||| || ||||| || | ||| || |||| |||||| Sbjct 1749158 AAATG-TGGTTCCCGTTGCTGTGTAGTTCTCTGCACACTTTTATGAATTTAAGATTTGTA 1749216 Query 2470 GGGGTTTGTAGAGGTTTT--AATTGGGAAAGTGCTTCTTCCTTGGTGAGGGAGCACTGTG 2527 ||| | || |||||||| | || ||| | || || || ||||| | || || Sbjct 1749217 GGG--TAGTTGAGGTTTTTGAGATGACGAAGAACATCATCTTTTGTGAGTAAACATCTTG 1749274 Query 2528 GATAAGTGAGAAAATAATTTTTG 2550 | |||||||||||||||||||| Sbjct 1749275 GGAAAGTGAGAAAATAATTTTTG 1749297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8607687389720